Variant report

Variant	rs3777770
Chromosome Location	chr6:12137176-12137177
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12011260..12013574-chr6:12135767..12137714,2	K562	blood:
2	chr6:12010023..12013574-chr6:12135767..12138101,3	K562	blood:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1126472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2228220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3734271	0.86[JPT][hapmap]
rs3777754	0.86[JPT][hapmap]
rs3777758	0.86[JPT][hapmap]
rs3777762	0.88[JPT][hapmap]
rs3777769	0.88[JPT][hapmap]
rs3777771	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3822926	0.88[JPT][hapmap]
rs4407714	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72826090	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751398	0.88[JPT][hapmap]
rs9357278	0.87[YRI][hapmap]
rs9380831	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394541	0.88[JPT][hapmap]
rs9394551	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830586	chr6:12130076-12295334	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12118400-12138400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:12119800-12138800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:12121400-12150200	Weak transcription	Fetal Brain Male	brain
4	chr6:12122000-12138200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:12122200-12137600	Weak transcription	Brain Anterior Caudate	brain
6	chr6:12122200-12137600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:12122200-12137600	Weak transcription	Brain Substantia Nigra	brain
8	chr6:12122200-12137800	Weak transcription	HMEC	breast
9	chr6:12122200-12138600	Weak transcription	Colonic Mucosa	Colon
10	chr6:12122200-12138600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:12122200-12138600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr6:12122200-12138800	Weak transcription	Ovary	ovary
13	chr6:12122200-12138800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr6:12122200-12139000	Weak transcription	Spleen	Spleen
15	chr6:12122200-12139200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:12122200-12161800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr6:12122400-12138200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:12122400-12138600	Weak transcription	Lung	lung
19	chr6:12122400-12139200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:12122400-12139200	Weak transcription	Placenta	Placenta
21	chr6:12122400-12139800	Weak transcription	Esophagus	oesophagus
22	chr6:12122600-12138200	Weak transcription	Primary B cells from cord blood	blood
23	chr6:12122600-12139000	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr6:12122800-12137200	Weak transcription	NHDF-Ad	bronchial
25	chr6:12122800-12137800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr6:12122800-12138400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:12122800-12138600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr6:12122800-12138600	Weak transcription	Gastric	stomach
29	chr6:12122800-12138600	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr6:12122800-12138600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr6:12122800-12138800	Weak transcription	Fetal Kidney	kidney
32	chr6:12122800-12138800	Weak transcription	Right Ventricle	heart
33	chr6:12122800-12139400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr6:12122800-12142800	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr6:12123000-12138600	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr6:12123400-12138600	Weak transcription	Duodenum Mucosa	Duodenum
37	chr6:12123600-12138200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:12124400-12138600	Weak transcription	Brain Germinal Matrix	brain
39	chr6:12124400-12139600	Weak transcription	Fetal Brain Female	brain
40	chr6:12125000-12138600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr6:12125000-12138600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr6:12125000-12138800	Weak transcription	Thymus	Thymus
43	chr6:12126000-12137800	Weak transcription	HepG2	liver
44	chr6:12126000-12138200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr6:12126200-12137800	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr6:12126600-12137200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr6:12126600-12138200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr6:12127200-12138200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr6:12127400-12138200	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr6:12127800-12137800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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