Variant report

Variant	rs3777796
Chromosome Location	chr6:133583873-133583874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10872402	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12175835	0.82[AMR][1000 genomes]
rs12190309	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12192839	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12193038	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12193158	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12202540	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12204996	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12206438	0.94[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1415858	0.95[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2180729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28405267	0.82[AMR][1000 genomes]
rs28620929	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3756869	0.95[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3756871	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3756872	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3777785	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3777799	0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55947866	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56377439	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62430275	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62430313	0.86[AMR][1000 genomes]
rs62430315	0.82[AMR][1000 genomes]
rs6569873	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6569874	0.84[ASN][1000 genomes]
rs6912995	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6927143	0.84[ASN][1000 genomes]
rs6940510	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7746298	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7750376	0.84[CEU][hapmap]
rs7754501	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9321393	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9373038	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9373041	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9373043	0.84[JPT][hapmap];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9373047	0.82[AMR][1000 genomes]
rs9375942	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9375943	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9375948	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9375949	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9375955	0.82[AMR][1000 genomes]
rs9385640	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9385641	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9385642	0.84[ASN][1000 genomes]
rs9389052	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9389059	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9389060	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9389061	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9389062	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9389064	0.84[AMR][1000 genomes]
rs9389066	0.86[AMR][1000 genomes]
rs9399053	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9399054	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9399055	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9399057	0.82[AMR][1000 genomes]
rs9402487	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9402489	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9402493	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9402494	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9402497	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9402498	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9483560	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758080	chr6:133444719-133627364	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2759470	chr6:133444719-133627364	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv470862	chr6:133492507-133600402	Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv886678	chr6:133550279-133631190	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv5483	chr6:133554303-133599338	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv886679	chr6:133578733-133635272	Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3474266	chr6:133582056-133591170	Strong transcription Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3474267	chr6:133582056-133591170	Strong transcription Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133575200-133585200	Weak transcription	Psoas Muscle	Psoas
2	chr6:133576600-133585200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:133579200-133585200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:133581000-133599000	Weak transcription	A549	lung
5	chr6:133581400-133593800	Weak transcription	Hela-S3	cervix
6	chr6:133582200-133585800	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr6:133582800-133585400	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr6:133583600-133584200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr6:133583800-133584000	Weak transcription	Pancreas	Pancrea

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