Variant report

Variant	rs3777804
Chromosome Location	chr6:133708746-133708747
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10484668	0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs10484669	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs1336520	0.87[CEU][hapmap]
rs159413	0.92[ASN][1000 genomes]
rs17062414	0.92[YRI][hapmap];0.84[AFR][1000 genomes]
rs1855988	0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs1998836	1.00[CEU][hapmap]
rs2095602	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs2095603	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs2223435	1.00[CEU][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes]
rs3777822	0.85[CHD][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs3777828	0.87[JPT][hapmap]
rs714178	1.00[CEU][hapmap]
rs742300	1.00[CEU][hapmap]
rs7760570	0.93[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs9373043	0.81[CEU][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3777804	EPB41L2	cis	parietal	SCAN
rs3777804	TAAR9	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133684600-133717800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:133701800-133710000	Weak transcription	Psoas Muscle	Psoas
3	chr6:133703800-133709800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:133703800-133713200	Weak transcription	HSMMtube	muscle
5	chr6:133707200-133709800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:133707600-133714400	Weak transcription	Hela-S3	cervix
7	chr6:133708400-133709000	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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