Variant report

Variant	rs3777828
Chromosome Location	chr6:133728650-133728651
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133715311..133717825-chr6:133725962..133728919,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11968392	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12660521	1.00[CEU][hapmap]
rs12662135	1.00[CEU][hapmap]
rs12664235	1.00[CEU][hapmap]
rs17062582	1.00[CEU][hapmap]
rs17062630	1.00[CEU][hapmap]
rs1855988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1883388	1.00[CEU][hapmap]
rs3777804	0.87[JPT][hapmap]
rs3777807	0.91[EUR][1000 genomes]
rs3777808	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs3777810	0.91[EUR][1000 genomes]
rs3777822	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3777856	1.00[CEU][hapmap]
rs3777868	1.00[CEU][hapmap]
rs3777871	1.00[CEU][hapmap]
rs3777873	1.00[CEU][hapmap]
rs3777874	1.00[CEU][hapmap]
rs3777878	1.00[CEU][hapmap]
rs3777879	1.00[CEU][hapmap]
rs3777880	1.00[CEU][hapmap]
rs3777883	1.00[CEU][hapmap]
rs3777884	1.00[CEU][hapmap]
rs3777885	1.00[CEU][hapmap]
rs58512026	0.80[AMR][1000 genomes]
rs6899314	1.00[CEU][hapmap]
rs6905892	1.00[CEU][hapmap]
rs6921578	1.00[CEU][hapmap]
rs7773315	1.00[CEU][hapmap]
rs970984	1.00[CEU][hapmap]
rs970985	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025700	chr6:133726264-133748758	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv604699	chr6:133726502-133747840	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1019755	chr6:133726502-133748758	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1020698	chr6:133726502-133751161	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv525971	chr6:133726646-133753825	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133720200-133748400	Weak transcription	Hela-S3	cervix
2	chr6:133720400-133749600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:133726600-133752200	Weak transcription	Right Atrium	heart
4	chr6:133727600-133729400	Weak transcription	Psoas Muscle	Psoas
5	chr6:133727600-133730000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:133728200-133729600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:133728200-133729800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:133728400-133729400	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr6:133728600-133728800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:133728600-133728800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:133728600-133728800	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr6:133728600-133729200	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr6:133728600-133729400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:133728600-133729600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr6:133728600-133729600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:133728600-133729600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:133728600-133729600	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr6:133728600-133729600	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr6:133728600-133729600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:133728600-133730600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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