Variant report

Variant	rs3777856
Chromosome Location	chr6:133753656-133753657
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11968392	1.00[CEU][hapmap]
rs12660521	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12661876	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12662135	1.00[CEU][hapmap]
rs12663756	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12664235	1.00[CEU][hapmap]
rs12664324	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12665147	0.99[ASN][1000 genomes]
rs17062561	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17062582	1.00[CEU][hapmap]
rs17062630	1.00[CEU][hapmap]
rs1855988	1.00[CEU][hapmap]
rs1883388	1.00[CEU][hapmap]
rs2076256	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs35863035	1.00[AFR][1000 genomes]
rs3777808	1.00[CEU][hapmap]
rs3777822	1.00[CEU][hapmap]
rs3777828	1.00[CEU][hapmap]
rs3777853	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3777863	0.93[JPT][hapmap]
rs3777868	1.00[CEU][hapmap]
rs3777871	1.00[CEU][hapmap]
rs3777873	1.00[CEU][hapmap]
rs3777874	1.00[CEU][hapmap]
rs3777878	1.00[CEU][hapmap]
rs3777879	1.00[CEU][hapmap]
rs3777880	1.00[CEU][hapmap]
rs3777883	1.00[CEU][hapmap]
rs3777884	1.00[CEU][hapmap]
rs3777885	1.00[CEU][hapmap]
rs3798355	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[ASN][1000 genomes]
rs55963818	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs56140782	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs58512026	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6899314	1.00[CEU][hapmap]
rs6905892	1.00[CEU][hapmap]
rs6921578	1.00[CEU][hapmap]
rs7773315	1.00[CEU][hapmap]
rs970984	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs970985	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525971	chr6:133726646-133753825	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133732600-133758200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:133749800-133777600	Weak transcription	Hela-S3	cervix
3	chr6:133752000-133753800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:133752000-133753800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:133752000-133754000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:133752200-133753800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr6:133752200-133754000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:133752200-133754200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr6:133752200-133754200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr6:133752400-133754200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr6:133752400-133754400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:133752400-133754400	Weak transcription	Psoas Muscle	Psoas
13	chr6:133752400-133763400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:133752600-133753800	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr6:133752600-133754000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:133752600-133754000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr6:133752800-133753800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:133752800-133753800	Enhancers	Fetal Muscle Leg	muscle
19	chr6:133753000-133753800	Enhancers	H1 Cell Line	embryonic stem cell
20	chr6:133753200-133753800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:133753200-133753800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr6:133753200-133753800	Enhancers	HSMM	muscle
23	chr6:133753200-133754000	Enhancers	H9 Cell Line	embryonic stem cell
24	chr6:133753200-133754000	Enhancers	Adipose Nuclei	Adipose
25	chr6:133753200-133754000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr6:133753200-133754200	Enhancers	HSMMtube	muscle
27	chr6:133753400-133753800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:133753400-133754000	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr6:133753600-133754000	Active TSS	Skeletal Muscle Male	skeletal muscle
30	chr6:133753600-133754800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr6:133753600-133755800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:133753600-133756400	Weak transcription	Left Ventricle	heart
33	chr6:133753600-133756400	Weak transcription	Right Atrium	heart

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