Variant report

Variant	rs3777874
Chromosome Location	chr6:133819844-133819845
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11962716	0.82[EUR][1000 genomes]
rs11964752	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11968392	1.00[CEU][hapmap]
rs12660521	1.00[CEU][hapmap]
rs12662135	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs12663243	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12664235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs17062582	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs17062630	1.00[CEU][hapmap];0.83[JPT][hapmap];0.82[EUR][1000 genomes]
rs17062634	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1855988	1.00[CEU][hapmap]
rs1883388	1.00[CEU][hapmap];0.84[JPT][hapmap];0.82[EUR][1000 genomes]
rs2143012	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2179341	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3777808	1.00[CEU][hapmap]
rs3777822	1.00[CEU][hapmap]
rs3777828	1.00[CEU][hapmap]
rs3777856	1.00[CEU][hapmap]
rs3777868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs3777869	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3777871	1.00[CEU][hapmap];0.84[JPT][hapmap];0.82[EUR][1000 genomes]
rs3777872	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3777873	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3777878	1.00[CEU][hapmap];0.84[JPT][hapmap];0.82[EUR][1000 genomes]
rs3777879	1.00[CEU][hapmap];0.84[JPT][hapmap]
rs3777880	1.00[CEU][hapmap];0.84[JPT][hapmap]
rs3777883	1.00[CEU][hapmap];0.84[JPT][hapmap]
rs3777884	1.00[CEU][hapmap];0.84[JPT][hapmap]
rs3777885	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes]
rs3822936	0.82[EUR][1000 genomes]
rs3886686	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56655335	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58073338	0.82[EUR][1000 genomes]
rs59342392	0.82[EUR][1000 genomes]
rs60226395	0.82[EUR][1000 genomes]
rs6899314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs6905892	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6921578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs73544957	1.00[EUR][1000 genomes]
rs73544971	0.82[EUR][1000 genomes]
rs73544989	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73544998	0.82[EUR][1000 genomes]
rs73544999	0.82[EUR][1000 genomes]
rs73546803	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73546821	0.82[EUR][1000 genomes]
rs7773315	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs970984	1.00[CEU][hapmap]
rs970985	1.00[CEU][hapmap]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133765800-133822000	Weak transcription	Psoas Muscle	Psoas
2	chr6:133787400-133822800	Weak transcription	Fetal Lung	lung
3	chr6:133790800-133821600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:133808600-133822000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:133810200-133820800	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:133810200-133821400	Weak transcription	Hela-S3	cervix
7	chr6:133812200-133820400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:133818400-133828400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:133818800-133820400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:133819200-133822000	Weak transcription	Fetal Kidney	kidney
11	chr6:133819800-133824000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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