Variant report

Variant	rs3777878
Chromosome Location	chr6:133821417-133821418
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11962716	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11964752	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11968392	1.00[CEU][hapmap]
rs12660521	1.00[CEU][hapmap]
rs12662135	1.00[CEU][hapmap]
rs12663242	0.91[AMR][1000 genomes]
rs12663243	0.82[EUR][1000 genomes]
rs12664235	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs17062582	1.00[CEU][hapmap];0.82[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs17062630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17062634	0.82[EUR][1000 genomes]
rs1855988	1.00[CEU][hapmap]
rs1883388	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2143012	0.82[EUR][1000 genomes]
rs2179341	0.82[EUR][1000 genomes]
rs3777808	1.00[CEU][hapmap]
rs3777822	1.00[CEU][hapmap]
rs3777828	1.00[CEU][hapmap]
rs3777856	1.00[CEU][hapmap]
rs3777868	1.00[CEU][hapmap];0.82[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs3777869	0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs3777871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777872	0.82[EUR][1000 genomes]
rs3777873	1.00[CEU][hapmap]
rs3777874	1.00[CEU][hapmap];0.84[JPT][hapmap];0.82[EUR][1000 genomes]
rs3777879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777880	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777883	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777884	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777885	1.00[CEU][hapmap]
rs3822936	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3822937	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs3886686	0.82[EUR][1000 genomes]
rs56655335	0.82[EUR][1000 genomes]
rs58073338	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59342392	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60226395	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6899314	1.00[CEU][hapmap];0.82[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6905892	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes]
rs6921578	1.00[CEU][hapmap];0.82[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73544957	0.82[EUR][1000 genomes]
rs73544971	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73544989	0.82[EUR][1000 genomes]
rs73544998	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73544999	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73546803	0.82[EUR][1000 genomes]
rs73546821	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773315	1.00[CEU][hapmap];0.82[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs970984	1.00[CEU][hapmap]
rs970985	1.00[CEU][hapmap]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133765800-133822000	Weak transcription	Psoas Muscle	Psoas
2	chr6:133787400-133822800	Weak transcription	Fetal Lung	lung
3	chr6:133790800-133821600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:133808600-133822000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:133818400-133828400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:133819200-133822000	Weak transcription	Fetal Kidney	kidney
7	chr6:133819800-133824000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:133820400-133821800	Strong transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:133820400-133822000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:133820600-133823600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:133820800-133824200	Enhancers	Fetal Muscle Leg	muscle
12	chr6:133821400-133821800	Weak transcription	Adipose Nuclei	Adipose
13	chr6:133821400-133823800	Weak transcription	Right Atrium	heart
14	chr6:133821400-133824800	Enhancers	Hela-S3	cervix

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