Variant report

Variant	rs3778934
Chromosome Location	chr7:39445385-39445386
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10259786	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10282168	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2190892	0.82[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2190893	0.88[CEU][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2237402	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2237403	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2237404	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56408610	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61223906	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs933370	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021180	chr7:39424988-39642261	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1026951	chr7:39429036-39642261	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv981456	chr7:39431071-39454006	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39436400-39445400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:39437600-39446000	Weak transcription	Pancreas	Pancrea
3	chr7:39440200-39446000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:39440800-39446000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:39441000-39446000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:39441000-39447200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr7:39441200-39446200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr7:39441400-39446600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr7:39441600-39445400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr7:39445000-39446200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr7:39445200-39445800	Active TSS	Liver	Liver
12	chr7:39445200-39446200	Active TSS	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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