Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126875739..126881778-chr7:126881781..126887011,8	K562	blood:
2	chr7:126879288..126881778-chr7:126885295..126887011,2	K562	blood:

Variant related genes	Relation type
ENSG00000179603	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10226369	0.82[AMR][1000 genomes]
rs10226675	1.00[JPT][hapmap];0.93[YRI][hapmap]
rs10227769	1.00[JPT][hapmap]
rs10234740	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10241965	1.00[JPT][hapmap]
rs10243967	1.00[JPT][hapmap]
rs10261152	1.00[JPT][hapmap]
rs10273755	1.00[JPT][hapmap]
rs10280829	1.00[JPT][hapmap]
rs10487472	0.87[CHD][hapmap]
rs11563676	1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];0.93[YRI][hapmap]
rs1419388	0.82[AMR][1000 genomes]
rs1592376	0.82[CHB][hapmap]
rs17863250	1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17866314	1.00[CHD][hapmap]
rs17866743	1.00[JPT][hapmap]
rs17866749	1.00[CHD][hapmap]
rs17867800	0.82[AMR][1000 genomes]
rs6947960	1.00[JPT][hapmap];0.95[LWK][hapmap];0.96[MKK][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6961760	1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6961944	1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7805944	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap]
rs7806403	1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1819919	chr7:126850298-126888714	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv464712	chr7:126881029-126908258	Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv608380	chr7:126881029-126908258	Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126880600-126881400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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