Variant report

Variant	rs3779996
Chromosome Location	chr8:107749211-107749212
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:107748936..107750658-chr8:107752847..107755089,2	MCF-7	breast:
2	chr8:107744131..107745711-chr8:107748039..107749795,2	K562	blood:
3	chr8:107747378..107749355-chr8:107751710..107754265,2	MCF-7	breast:
4	chr8:107669058..107671835-chr8:107748607..107750737,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164830	Chromatin interaction
ENSG00000253582	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10086709	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10087077	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10088694	0.85[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10089357	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10089618	0.87[EUR][1000 genomes]
rs10089890	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10090534	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10091390	1.00[CEU][hapmap];0.83[CHB][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10091611	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10092665	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10099361	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10100839	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10101102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10102112	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10104941	1.00[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10106834	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10108240	1.00[CEU][hapmap];0.83[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10110610	1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10283128	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10283130	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1115200	0.88[CEU][hapmap];0.88[JPT][hapmap]
rs12543558	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12544138	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12547372	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12547608	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12548149	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13254031	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13255878	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13259080	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13268490	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16875002	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16875065	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16875066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1872282	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2035515	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2126580	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28422868	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28808577	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28921372	0.80[EUR][1000 genomes]
rs28921395	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35108468	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35499727	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35919651	0.86[EUR][1000 genomes]
rs36011510	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3736179	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59316573	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6651199	0.83[EUR][1000 genomes]
rs7461484	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9297385	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107710400-107755400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107719600-107762400	Weak transcription	Lung	lung
3	chr8:107719600-107765600	Weak transcription	Colonic Mucosa	Colon
4	chr8:107719600-107775200	Weak transcription	Gastric	stomach
5	chr8:107719600-107777800	Weak transcription	Esophagus	oesophagus
6	chr8:107719800-107753800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr8:107724800-107751400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr8:107733000-107751200	Weak transcription	HepG2	liver
9	chr8:107734200-107750600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr8:107736200-107751600	Weak transcription	Primary B cells from peripheral blood	blood
11	chr8:107737200-107750000	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr8:107738000-107755400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr8:107738600-107751600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr8:107738600-107755400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr8:107738600-107755400	Weak transcription	Fetal Intestine Small	intestine
16	chr8:107738800-107751400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr8:107738800-107757000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr8:107739000-107752600	Weak transcription	Fetal Intestine Large	intestine
19	chr8:107739000-107753000	Weak transcription	Colon Smooth Muscle	Colon
20	chr8:107739000-107754200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr8:107739000-107758000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr8:107739000-107775200	Weak transcription	A549	lung
23	chr8:107739200-107751600	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr8:107739200-107752000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr8:107739200-107752600	Weak transcription	Fetal Kidney	kidney
26	chr8:107739200-107752600	Weak transcription	Fetal Thymus	thymus
27	chr8:107739200-107753200	Weak transcription	NHLF	lung
28	chr8:107739200-107760800	Weak transcription	Fetal Stomach	stomach
29	chr8:107739600-107751600	Weak transcription	Liver	Liver
30	chr8:107740000-107751600	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr8:107740000-107751600	Weak transcription	Primary hematopoietic stem cells	blood
32	chr8:107740000-107751600	Weak transcription	Left Ventricle	heart
33	chr8:107740000-107756200	Weak transcription	Psoas Muscle	Psoas
34	chr8:107740000-107759600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr8:107740000-107775200	Weak transcription	Ovary	ovary
36	chr8:107740200-107749800	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr8:107740200-107752400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr8:107740200-107754400	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr8:107740200-107755400	Weak transcription	Thymus	Thymus
40	chr8:107740200-107767400	Weak transcription	K562	blood
41	chr8:107740200-107783800	Weak transcription	Fetal Brain Male	brain
42	chr8:107740400-107751400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr8:107740400-107751800	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr8:107740400-107752600	Weak transcription	Brain Hippocampus Middle	brain
45	chr8:107740400-107755200	Weak transcription	Brain Angular Gyrus	brain
46	chr8:107740800-107751600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr8:107740800-107751600	Weak transcription	Fetal Lung	lung
48	chr8:107740800-107775200	Weak transcription	Brain Substantia Nigra	brain
49	chr8:107741000-107768200	Weak transcription	Brain Germinal Matrix	brain
50	chr8:107741600-107751600	Weak transcription	Dnd41	blood

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