Variant report

Variant	rs378011
Chromosome Location	chr7:101849396-101849397
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101848603..101850425-chr7:101852755..101855583,2	MCF-7	breast:
2	chr7:101845042..101847661-chr7:101848219..101850532,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10270614	0.82[CEU][hapmap]
rs1108056	0.88[CEU][hapmap]
rs11760331	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11772514	0.85[AMR][1000 genomes]
rs12537077	0.88[CEU][hapmap];0.83[CHD][hapmap]
rs367356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs442483	0.87[AFR][1000 genomes]
rs55961409	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6976947	0.88[CEU][hapmap]
rs7788596	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7801220	1.00[CEU][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7801259	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7805317	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs378011	STAG3	cis	cerebellum	SCAN
rs378011	CUX1	cis	parietal	SCAN

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101797800-101852200	Weak transcription	NHEK	skin
2	chr7:101800400-101850000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr7:101800600-101851800	Strong transcription	Fetal Intestine Small	intestine
4	chr7:101801200-101864000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:101805400-101862200	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr7:101808400-101868400	Strong transcription	Thymus	Thymus
7	chr7:101812400-101860800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr7:101812600-101863200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:101812600-101867000	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr7:101812600-101867000	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr7:101813200-101852000	Weak transcription	NHDF-Ad	bronchial
12	chr7:101813800-101860800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr7:101814000-101863600	Weak transcription	HUVEC	blood vessel
14	chr7:101814200-101858600	Weak transcription	Right Atrium	heart
15	chr7:101816000-101859800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr7:101817200-101851200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr7:101820600-101860200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr7:101821200-101857200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr7:101823400-101853800	Weak transcription	Fetal Kidney	kidney
20	chr7:101824400-101851200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr7:101824400-101863400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr7:101829400-101870800	Weak transcription	Small Intestine	intestine
23	chr7:101831600-101850200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr7:101831600-101851000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr7:101831600-101855800	Strong transcription	Left Ventricle	heart
26	chr7:101831800-101852200	Strong transcription	Lung	lung
27	chr7:101832200-101850400	Strong transcription	Primary B cells from peripheral blood	blood
28	chr7:101832200-101858200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr7:101832200-101859200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr7:101832200-101859400	Strong transcription	Fetal Thymus	thymus
31	chr7:101832200-101863200	Strong transcription	Dnd41	blood
32	chr7:101832400-101853800	Strong transcription	Fetal Muscle Leg	muscle
33	chr7:101832400-101856600	Strong transcription	Stomach Smooth Muscle	stomach
34	chr7:101832400-101864000	Strong transcription	Fetal Stomach	stomach
35	chr7:101832600-101857800	Weak transcription	Fetal Heart	heart
36	chr7:101832600-101860200	Strong transcription	Duodenum Mucosa	Duodenum
37	chr7:101832800-101850600	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr7:101832800-101852400	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr7:101832800-101864800	Strong transcription	Primary T cells from cord blood	blood
40	chr7:101833000-101849800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr7:101833000-101850800	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr7:101833000-101852800	Strong transcription	Sigmoid Colon	Sigmoid Colon
43	chr7:101833200-101850800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr7:101834000-101849400	Strong transcription	Spleen	Spleen
45	chr7:101834600-101849800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr7:101834600-101860200	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr7:101835000-101850800	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr7:101835000-101851200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr7:101835200-101850600	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr7:101835200-101852800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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