Variant report

Variant	rs3781900
Chromosome Location	chr11:57126838-57126839
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr11:57125307-57127276	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000266018	TF binding region

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10896610	0.91[AFR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10896611	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1837974	0.98[AFR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2013314	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155234	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2276038	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2276039	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2276040	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2276041	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2276042	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3781899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4570598	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4939140	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4939141	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55741081	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55756513	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56077100	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59455760	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60931171	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72923914	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs879646	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs894450	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9667065	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57117600-57140000	Weak transcription	Right Atrium	heart
2	chr11:57122000-57127200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:57122600-57127200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:57122600-57127400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr11:57123600-57127400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:57124000-57127000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:57124200-57127000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr11:57124200-57127600	Enhancers	NHEK	skin
9	chr11:57124800-57127400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:57125000-57128200	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr11:57125000-57128800	Enhancers	Fetal Muscle Leg	muscle
12	chr11:57125200-57127000	Enhancers	K562	blood
13	chr11:57125200-57127800	Enhancers	HSMMtube	muscle
14	chr11:57125200-57128000	Enhancers	Hela-S3	cervix
15	chr11:57125200-57128200	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr11:57126000-57127800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:57126200-57127800	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr11:57126200-57127800	Enhancers	Fetal Muscle Trunk	muscle
19	chr11:57126400-57127200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:57126400-57127400	Enhancers	H1 Cell Line	embryonic stem cell
21	chr11:57126400-57127600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:57126600-57127200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:57126600-57127200	Enhancers	A549	lung
24	chr11:57126600-57127800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr11:57126600-57127800	Enhancers	Pancreas	Pancrea
26	chr11:57126600-57128200	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr11:57126800-57127000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr11:57126800-57127200	Enhancers	Placenta	Placenta
29	chr11:57126800-57127200	Bivalent Enhancer	Fetal Stomach	stomach

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