Variant report

Variant	rs3782671
Chromosome Location	chr12:10794021-10794022
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:10793469..10795596-chr12:10796533..10798313,2	MCF-7	breast:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10083035	0.84[EUR][1000 genomes]
rs10431297	0.86[EUR][1000 genomes]
rs1073305	0.84[EUR][1000 genomes]
rs10743912	0.86[EUR][1000 genomes]
rs10743913	0.84[EUR][1000 genomes]
rs10743916	0.84[EUR][1000 genomes]
rs10772339	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10772340	0.86[EUR][1000 genomes]
rs10772343	0.84[EUR][1000 genomes]
rs10772344	0.84[EUR][1000 genomes]
rs10772346	0.83[EUR][1000 genomes]
rs1078437	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10845186	0.87[ASN][1000 genomes]
rs10845187	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10845188	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10845189	0.89[EUR][1000 genomes]
rs10845192	0.83[EUR][1000 genomes]
rs10845193	0.83[EUR][1000 genomes]
rs10845194	0.81[EUR][1000 genomes]
rs10845195	0.81[EUR][1000 genomes]
rs10845197	0.80[EUR][1000 genomes]
rs11053886	0.84[ASN][1000 genomes]
rs12316690	0.84[EUR][1000 genomes]
rs12321017	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12582745	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17742332	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1979268	0.91[ASN][1000 genomes]
rs1989218	0.86[EUR][1000 genomes]
rs1993498	0.86[EUR][1000 genomes]
rs1993500	0.91[ASN][1000 genomes]
rs2009908	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2054194	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2054195	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2168746	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2168747	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2168748	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2252664	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2277410	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2290717	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2418087	0.85[EUR][1000 genomes]
rs2418088	0.85[EUR][1000 genomes]
rs2418089	0.84[EUR][1000 genomes]
rs2418090	0.84[EUR][1000 genomes]
rs2418091	0.84[EUR][1000 genomes]
rs2418092	0.84[EUR][1000 genomes]
rs2418093	0.83[EUR][1000 genomes]
rs2418094	0.83[EUR][1000 genomes]
rs2418095	0.83[EUR][1000 genomes]
rs2900513	0.84[EUR][1000 genomes]
rs3759259	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3759260	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3983439	0.89[EUR][1000 genomes]
rs4561286	0.83[EUR][1000 genomes]
rs4763571	0.83[EUR][1000 genomes]
rs4763573	0.83[EUR][1000 genomes]
rs4763574	0.83[EUR][1000 genomes]
rs4763575	0.83[EUR][1000 genomes]
rs61912160	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61912161	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61912180	0.85[EUR][1000 genomes]
rs61912182	0.84[EUR][1000 genomes]
rs6416268	0.84[EUR][1000 genomes]
rs6488316	0.85[EUR][1000 genomes]
rs6488317	0.84[EUR][1000 genomes]
rs71450684	0.81[EUR][1000 genomes]
rs7307408	0.84[EUR][1000 genomes]
rs7313620	0.86[EUR][1000 genomes]
rs7350557	0.86[EUR][1000 genomes]
rs7350597	0.86[EUR][1000 genomes]
rs7486826	0.86[EUR][1000 genomes]
rs7957041	0.83[EUR][1000 genomes]
rs7969783	0.83[EUR][1000 genomes]
rs7970299	0.83[EUR][1000 genomes]
rs7970568	0.83[EUR][1000 genomes]
rs7971142	0.88[EUR][1000 genomes]
rs8181761	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832329	chr12:10677094-10845946	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv607	chr12:10776867-10821535	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10766600-10794400	Weak transcription	Gastric	stomach
2	chr12:10787600-10794200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr12:10787600-10794200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr12:10787800-10797800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr12:10788000-10794400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:10788600-10797400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr12:10789800-10795000	Enhancers	Stomach Mucosa	stomach
8	chr12:10790600-10799200	Weak transcription	Esophagus	oesophagus
9	chr12:10792600-10796600	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr12:10792800-10795000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr12:10793200-10794400	Flanking Active TSS	HUVEC	blood vessel
12	chr12:10793600-10795200	Enhancers	NHDF-Ad	bronchial
13	chr12:10793800-10794600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr12:10793800-10794800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr12:10793800-10795200	Enhancers	Placenta	Placenta
16	chr12:10794000-10794200	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr12:10794000-10794400	Enhancers	Right Atrium	heart
18	chr12:10794000-10794400	Enhancers	NHEK	skin
19	chr12:10794000-10794600	Enhancers	HSMM	muscle
20	chr12:10794000-10794800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr12:10794000-10794800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr12:10794000-10794800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr12:10794000-10794800	Enhancers	Placenta Amnion	Placenta Amnion
24	chr12:10794000-10794800	Enhancers	HMEC	breast
25	chr12:10794000-10794800	Enhancers	Osteobl	bone
26	chr12:10794000-10795000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr12:10794000-10795000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr12:10794000-10795000	Enhancers	Muscle Satellite Cultured Cells	--
29	chr12:10794000-10795000	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr12:10794000-10795000	Enhancers	NH-A	brain

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