Variant report

Variant	rs3784151
Chromosome Location	chr14:70177059-70177060
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:70160859..70163841-chr14:70176614..70179491,2	K562	blood:
2	chr14:70172067..70174667-chr14:70175869..70177439,2	K562	blood:
3	chr14:70163089..70166049-chr14:70176674..70179020,3	MCF-7	breast:
4	chr14:70172067..70174968-chr14:70175832..70177369,2	K562	blood:
5	chr14:70175565..70179211-chr14:70180408..70183769,4	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10144825	0.91[EUR][1000 genomes]
rs10747300	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs17107137	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107174	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2184598	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs3784148	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3784150	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3809394	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3809396	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899302	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs4899306	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4902735	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs4902736	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs60897990	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70160000-70177600	Weak transcription	Fetal Brain Female	brain
2	chr14:70161600-70179200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr14:70162800-70178000	Weak transcription	HSMM	muscle
4	chr14:70163000-70177800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr14:70163400-70179400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr14:70163400-70183400	Weak transcription	Hela-S3	cervix
7	chr14:70164000-70178800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr14:70166600-70179000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr14:70168000-70177400	Strong transcription	Fetal Intestine Small	intestine
10	chr14:70168200-70179200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr14:70169000-70177600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr14:70170000-70178000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr14:70170000-70178000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr14:70170000-70178200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr14:70170000-70178400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr14:70170200-70177600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr14:70170200-70177600	Strong transcription	Fetal Intestine Large	intestine
18	chr14:70170200-70177600	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr14:70170200-70178400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr14:70170200-70178400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr14:70170400-70177400	Weak transcription	Fetal Heart	heart
22	chr14:70170400-70177400	Weak transcription	Small Intestine	intestine
23	chr14:70170400-70177600	Strong transcription	Sigmoid Colon	Sigmoid Colon
24	chr14:70170400-70178200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr14:70170400-70178800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr14:70170600-70177600	Weak transcription	Right Atrium	heart
27	chr14:70170600-70177800	Weak transcription	Ovary	ovary
28	chr14:70170600-70178600	Strong transcription	Thymus	Thymus
29	chr14:70170800-70177600	Strong transcription	Duodenum Mucosa	Duodenum
30	chr14:70170800-70178400	Strong transcription	Primary T cells from cord blood	blood
31	chr14:70171400-70177200	Weak transcription	NH-A	brain
32	chr14:70171400-70177800	Strong transcription	Liver	Liver
33	chr14:70172200-70177200	Strong transcription	Left Ventricle	heart
34	chr14:70172200-70177800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr14:70172600-70177200	Strong transcription	Lung	lung
36	chr14:70172600-70177400	Strong transcription	Adipose Nuclei	Adipose
37	chr14:70172600-70177800	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr14:70172600-70177800	Weak transcription	NHLF	lung
39	chr14:70172800-70177600	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr14:70172800-70178000	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr14:70173200-70177400	Strong transcription	Rectal Smooth Muscle	rectum
42	chr14:70173600-70177200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr14:70174000-70177400	Strong transcription	Fetal Stomach	stomach
44	chr14:70174000-70178000	Strong transcription	HMEC	breast
45	chr14:70174200-70180200	Genic enhancers	Primary monocytes fromperipheralblood	blood
46	chr14:70174600-70179000	Strong transcription	Primary T killer memory cells from peripheral blood	blood
47	chr14:70174800-70177400	Strong transcription	Stomach Smooth Muscle	stomach
48	chr14:70174800-70178400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr14:70174800-70178600	Strong transcription	Dnd41	blood
50	chr14:70175000-70178600	Strong transcription	Osteobl	bone

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