Variant report

Variant	rs3784181
Chromosome Location	chr14:32870052-32870053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1805261	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1951182	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1951184	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1951691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2025261	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2031106	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9888599	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv976820	chr14:32860301-32873799	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32865400-32871400	Enhancers	Brain Anterior Caudate	brain
2	chr14:32865600-32876400	Weak transcription	Fetal Brain Male	brain
3	chr14:32866400-32876200	Weak transcription	Left Ventricle	heart
4	chr14:32866800-32871200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr14:32867000-32870800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr14:32867200-32870800	Enhancers	HSMM	muscle
7	chr14:32867600-32873000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr14:32867600-32876600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr14:32867600-32882800	Weak transcription	Fetal Brain Female	brain
10	chr14:32867800-32871200	Weak transcription	Fetal Heart	heart
11	chr14:32867800-32872600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr14:32867800-32875800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr14:32868000-32871000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr14:32868000-32872800	Weak transcription	NH-A	brain
15	chr14:32868000-32872800	Weak transcription	NHEK	skin
16	chr14:32868000-32873400	Weak transcription	Colon Smooth Muscle	Colon
17	chr14:32868000-32874400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr14:32868000-32876000	Weak transcription	Brain Angular Gyrus	brain
19	chr14:32868400-32872800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr14:32868800-32873600	Weak transcription	Brain Hippocampus Middle	brain
21	chr14:32868800-32874000	Weak transcription	Brain Germinal Matrix	brain
22	chr14:32869000-32870400	Enhancers	Muscle Satellite Cultured Cells	--
23	chr14:32869400-32872400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr14:32869400-32874200	Weak transcription	Brain Substantia Nigra	brain
25	chr14:32869800-32870200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr14:32869800-32870400	Enhancers	HMEC	breast
27	chr14:32870000-32870400	Enhancers	NHDF-Ad	bronchial
28	chr14:32870000-32870400	Enhancers	Osteobl	bone
29	chr14:32870000-32876200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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