Variant report

Variant	rs3784203
Chromosome Location	chr14:33083060-33083061
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:33081326..33083127-chr14:33096469..33099467,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10130459	0.85[CEU][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10138218	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1033678	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10735738	1.00[ASN][1000 genomes]
rs11156754	1.00[ASN][1000 genomes]
rs11625087	0.89[CEU][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11626762	0.82[ASN][1000 genomes]
rs12717222	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17099309	0.86[ASN][1000 genomes]
rs17099320	0.86[ASN][1000 genomes]
rs17099324	0.86[ASN][1000 genomes]
rs17099326	0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs1956212	0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs1956219	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4981992	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981993	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981995	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61981363	0.89[ASN][1000 genomes]
rs61983021	0.86[ASN][1000 genomes]
rs6571540	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6571541	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6571547	0.81[AMR][1000 genomes]
rs7146517	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7152044	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7154753	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7156763	0.89[CEU][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7157328	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7157533	0.89[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7157744	0.89[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7160156	0.81[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73255099	0.89[ASN][1000 genomes]
rs8017249	0.82[ASN][1000 genomes]
rs927060	0.81[AMR][1000 genomes]
rs979494	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33072200-33103600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr14:33072400-33091800	Weak transcription	Left Ventricle	heart
3	chr14:33076000-33083200	Enhancers	NHDF-Ad	bronchial
4	chr14:33078800-33097000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr14:33078800-33098200	Weak transcription	Fetal Muscle Leg	muscle
6	chr14:33078800-33102600	Weak transcription	Aorta	Aorta
7	chr14:33080000-33104200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr14:33080600-33083600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr14:33081200-33083200	Weak transcription	Brain Hippocampus Middle	brain
10	chr14:33081200-33089600	Weak transcription	Fetal Heart	heart
11	chr14:33081400-33092800	Weak transcription	Brain Substantia Nigra	brain
12	chr14:33081600-33083400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr14:33081600-33090200	Weak transcription	HSMMtube	muscle
14	chr14:33081600-33091800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr14:33081600-33091800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr14:33082400-33083400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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