Variant report

Variant	rs3784333
Chromosome Location	chr15:78635188-78635189
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16969725	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4886568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62010361	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8026332	1.00[CEU][hapmap];0.91[CHB][hapmap];0.88[ASN][1000 genomes]
rs8037145	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
3	nsv833063	chr15:78605215-78754945	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1052910	chr15:78608637-78707049	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78633400-78635400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr15:78633800-78636800	Weak transcription	Right Atrium	heart
3	chr15:78633800-78638800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr15:78634200-78636000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:78634400-78635200	Enhancers	H9 Cell Line	embryonic stem cell
6	chr15:78634600-78635800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr15:78634600-78637800	Bivalent Enhancer	Fetal Muscle Leg	muscle
8	chr15:78634600-78652800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:78634800-78639600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr15:78635000-78635200	Genic enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:78635000-78635200	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:78635000-78635200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr15:78635000-78635200	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
14	chr15:78635000-78635400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:78635000-78635400	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr15:78635000-78635800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr15:78635000-78636000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:78635000-78640400	Strong transcription	H1 Cell Line	embryonic stem cell
19	chr15:78635000-78640400	Strong transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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