Variant report

Variant	rs3792037
Chromosome Location	chr2:11757086-11757087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:11755856..11757722-chr2:11823519..11825566,2	MCF-7	breast:
2	chr2:11621457..11624787-chr2:11753040..11757547,4	MCF-7	breast:
3	chr2:11755565..11757237-chr2:11761196..11763519,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2304400	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3792038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs892868	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010506	chr2:11430965-12057286	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv535585	chr2:11430965-12057286	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv873663	chr2:11664349-11783775	Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11700000-11767000	Weak transcription	Right Atrium	heart
2	chr2:11714400-11765000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:11717600-11767000	Weak transcription	Fetal Intestine Small	intestine
4	chr2:11724400-11788600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr2:11724600-11766800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:11724600-11766800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:11725600-11766800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr2:11733600-11784000	Strong transcription	HepG2	liver
9	chr2:11736200-11765000	Weak transcription	Fetal Lung	lung
10	chr2:11736800-11762800	Weak transcription	Fetal Heart	heart
11	chr2:11743200-11765200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr2:11743400-11765000	Weak transcription	Left Ventricle	heart
13	chr2:11745200-11765000	Weak transcription	Fetal Kidney	kidney
14	chr2:11747200-11767200	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr2:11748000-11766800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr2:11748600-11767600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr2:11749000-11763200	Strong transcription	Fetal Stomach	stomach
18	chr2:11749000-11766800	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr2:11749400-11763400	Strong transcription	Fetal Muscle Trunk	muscle
20	chr2:11749600-11759600	Strong transcription	H9 Cell Line	embryonic stem cell
21	chr2:11750000-11760200	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr2:11750600-11757400	Strong transcription	Pancreas	Pancrea
23	chr2:11752000-11784400	Strong transcription	Ovary	ovary
24	chr2:11752200-11761400	Weak transcription	Adipose Nuclei	Adipose
25	chr2:11752600-11757200	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr2:11752800-11767200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr2:11753200-11758800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr2:11753400-11759400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr2:11754000-11757200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr2:11754200-11759200	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr2:11754200-11759600	Strong transcription	Brain Inferior Temporal Lobe	brain
32	chr2:11754200-11766600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr2:11754800-11759600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr2:11754800-11759800	Strong transcription	Fetal Muscle Leg	muscle
35	chr2:11755000-11757200	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr2:11755000-11758800	Strong transcription	Skeletal Muscle Male	skeletal muscle
37	chr2:11755000-11759600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr2:11755200-11757800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr2:11755200-11757800	Strong transcription	Pancreatic Islets	Pancreatic Islet
40	chr2:11755200-11759400	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr2:11755200-11759600	Strong transcription	Brain Anterior Caudate	brain
42	chr2:11755200-11759600	Strong transcription	Brain Cingulate Gyrus	brain
43	chr2:11755200-11763000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr2:11755200-11776800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr2:11755400-11757600	Strong transcription	Liver	Liver
46	chr2:11755600-11758800	Strong transcription	Brain Substantia Nigra	brain
47	chr2:11756400-11758000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
48	chr2:11756400-11758400	Weak transcription	Gastric	stomach
49	chr2:11756600-11759600	Strong transcription	Brain Hippocampus Middle	brain
50	chr2:11757000-11759200	Strong transcription	Right Ventricle	heart

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