Variant report

Variant	rs3792652
Chromosome Location	chr4:144311261-144311262
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr4:144310697-144311324	HepG2	liver:	n/a	n/a
2	FOS	chr4:144310716-144311337	MCF10A-Er-Src	breast:	n/a	chr4:144311080-144311094
3	CEBPB	chr4:144310828-144311321	HepG2	liver:	n/a	n/a
4	CEBPB	chr4:144310756-144311341	IMR90	lung:	n/a	n/a
5	CEBPB	chr4:144310976-144311334	Hela-S3	cervix:	n/a	n/a
6	FOXA2	chr4:144310526-144311551	HepG2	liver:	n/a	chr4:144311189-144311201
7	STAT3	chr4:144310947-144311284	MCF10A-Er-Src	breast:	n/a	n/a
8	STAT3	chr4:144310739-144311323	MCF10A-Er-Src	breast:	n/a	n/a
9	FOS	chr4:144310713-144311337	MCF10A-Er-Src	breast:	n/a	chr4:144311080-144311094
10	STAT3	chr4:144310822-144311292	MCF10A-Er-Src	breast:	n/a	n/a
11	FOS	chr4:144310739-144311292	MCF10A-Er-Src	breast:	n/a	chr4:144311080-144311094
12	STAT3	chr4:144310810-144311405	MCF10A-Er-Src	breast:	n/a	n/a
13	FOS	chr4:144310702-144311350	MCF10A-Er-Src	breast:	n/a	chr4:144311080-144311094
14	CEBPB	chr4:144311000-144311305	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:144305860..144307696-chr4:144310881..144312432,2	MCF-7	breast:
2	chr4:144308580..144312274-chr4:144317112..144320354,4	K562	blood:

Variant related genes	Relation type
GAB1	TF binding region

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10013047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1027851	0.91[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1027852	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10519691	0.82[CHB][hapmap];0.86[CHD][hapmap];0.84[JPT][hapmap]
rs11100786	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11100787	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11100788	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11100789	0.85[ASN][1000 genomes]
rs11730569	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11945731	0.91[ASN][1000 genomes]
rs12647531	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12649592	0.98[ASN][1000 genomes]
rs13101346	0.96[ASN][1000 genomes]
rs13123498	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1397526	0.87[ASN][1000 genomes]
rs1397528	1.00[CHB][hapmap];0.90[CHD][hapmap];0.84[JPT][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1472873	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1510879	0.91[ASN][1000 genomes]
rs1510880	0.84[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.98[ASN][1000 genomes]
rs1866756	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2048408	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2055730	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2119270	0.98[ASN][1000 genomes]
rs2196908	0.96[ASN][1000 genomes]
rs2196909	0.86[CEU][hapmap];0.96[ASN][1000 genomes]
rs300890	0.84[JPT][hapmap]
rs300893	0.84[JPT][hapmap]
rs300894	0.84[JPT][hapmap]
rs300895	0.84[JPT][hapmap]
rs300904	0.84[JPT][hapmap]
rs300905	0.84[JPT][hapmap]
rs300910	0.87[ASN][1000 genomes]
rs300911	0.89[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs300912	0.89[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs300913	0.89[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs300914	0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs300915	0.89[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs300916	0.89[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs300917	0.89[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs300918	0.83[ASN][1000 genomes]
rs300919	0.84[JPT][hapmap]
rs34095331	0.88[ASN][1000 genomes]
rs34439737	0.92[ASN][1000 genomes]
rs3792653	0.84[CEU][hapmap];0.98[ASN][1000 genomes]
rs3792655	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3805238	1.00[CHB][hapmap];0.94[CHD][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs3805245	0.98[ASN][1000 genomes]
rs3805246	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3805247	0.84[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805249	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3805251	0.84[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.98[ASN][1000 genomes]
rs3805252	0.98[ASN][1000 genomes]
rs3805253	0.84[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.98[ASN][1000 genomes]
rs3805254	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3805256	0.84[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.96[ASN][1000 genomes]
rs3805257	0.83[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3828512	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3828513	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3828514	0.98[ASN][1000 genomes]
rs55758499	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55894236	0.99[ASN][1000 genomes]
rs6537154	0.97[ASN][1000 genomes]
rs6537155	0.84[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.98[ASN][1000 genomes]
rs713140	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs719392	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7680959	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs906571	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144302800-144312600	Weak transcription	Placenta	Placenta
2	chr4:144303000-144312000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:144303000-144318000	Weak transcription	HSMM	muscle
4	chr4:144303200-144311800	Weak transcription	Brain Germinal Matrix	brain
5	chr4:144303200-144312000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr4:144303200-144317800	Weak transcription	Gastric	stomach
7	chr4:144303400-144312000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr4:144303400-144312600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:144303400-144326600	Weak transcription	Colonic Mucosa	Colon
10	chr4:144304200-144320000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr4:144304400-144312000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:144304600-144312600	Weak transcription	HSMMtube	muscle
13	chr4:144304600-144317000	Weak transcription	K562	blood
14	chr4:144305200-144311800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr4:144305200-144311800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr4:144306000-144312000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr4:144306000-144312000	Weak transcription	Fetal Muscle Leg	muscle
18	chr4:144306000-144312000	Weak transcription	Pancreas	Pancrea
19	chr4:144306600-144312000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr4:144306600-144318000	Weak transcription	Aorta	Aorta
21	chr4:144307000-144311800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr4:144307400-144312000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr4:144307400-144323600	Enhancers	Brain Hippocampus Middle	brain
24	chr4:144307800-144311800	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr4:144307800-144313000	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr4:144308000-144313400	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr4:144308000-144316400	Enhancers	Brain Substantia Nigra	brain
28	chr4:144308200-144311400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr4:144308200-144311600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr4:144308200-144313800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr4:144308600-144313000	Enhancers	Primary B cells from cord blood	blood
32	chr4:144308600-144315400	Enhancers	Fetal Lung	lung
33	chr4:144308800-144311400	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr4:144308800-144311800	Weak transcription	Duodenum Mucosa	Duodenum
35	chr4:144308800-144312400	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr4:144308800-144313000	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr4:144308800-144319400	Enhancers	Brain Cingulate Gyrus	brain
38	chr4:144309200-144311600	Weak transcription	Fetal Intestine Large	intestine
39	chr4:144309200-144312000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr4:144309200-144312000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr4:144309200-144312000	Weak transcription	Fetal Brain Female	brain
42	chr4:144309200-144312000	Weak transcription	Ovary	ovary
43	chr4:144309200-144312000	Weak transcription	Right Ventricle	heart
44	chr4:144309200-144317000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr4:144309200-144327600	Weak transcription	Esophagus	oesophagus
46	chr4:144309400-144313200	Enhancers	Fetal Heart	heart
47	chr4:144309600-144311400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr4:144309600-144311800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr4:144309600-144312800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr4:144309800-144311800	Weak transcription	Primary B cells from peripheral blood	blood

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