Variant report

Variant	rs3792653
Chromosome Location	chr4:144308661-144308662
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:144307947..144309781-chr4:144310910..144313103,2	K562	blood:
2	chr4:144301169..144303738-chr4:144307598..144309127,2	K562	blood:
3	chr4:144308580..144312274-chr4:144317112..144320354,4	K562	blood:
4	chr4:144257977..144259931-chr4:144307446..144310304,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109458	Chromatin interaction
ENSG00000178972	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10013047	0.98[ASN][1000 genomes]
rs1027851	0.83[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1027852	0.98[ASN][1000 genomes]
rs11100786	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11100787	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11100788	0.96[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11100789	0.83[ASN][1000 genomes]
rs11730569	0.97[ASN][1000 genomes]
rs11945731	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12647531	0.97[ASN][1000 genomes]
rs12649592	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13101346	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13123498	0.83[CEU][hapmap];0.96[ASN][1000 genomes]
rs1397526	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1397527	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1397528	0.84[ASN][1000 genomes]
rs1472873	0.97[ASN][1000 genomes]
rs1510879	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1510880	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1866756	0.98[ASN][1000 genomes]
rs2048408	0.96[ASN][1000 genomes]
rs2055730	0.97[ASN][1000 genomes]
rs2119270	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2196908	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2196909	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs300910	0.87[ASN][1000 genomes]
rs300911	0.81[CEU][hapmap];0.85[ASN][1000 genomes]
rs300912	0.80[CEU][hapmap];0.85[ASN][1000 genomes]
rs300913	0.85[ASN][1000 genomes]
rs300914	0.85[ASN][1000 genomes]
rs300915	0.85[ASN][1000 genomes]
rs300916	0.82[ASN][1000 genomes]
rs300917	0.81[ASN][1000 genomes]
rs300918	0.81[ASN][1000 genomes]
rs34095331	0.87[ASN][1000 genomes]
rs34439737	0.90[ASN][1000 genomes]
rs3792652	0.84[CEU][hapmap];0.98[ASN][1000 genomes]
rs3792655	0.97[ASN][1000 genomes]
rs3805238	0.86[ASN][1000 genomes]
rs3805245	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805246	0.97[ASN][1000 genomes]
rs3805247	0.98[ASN][1000 genomes]
rs3805249	0.97[ASN][1000 genomes]
rs3805251	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3805252	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3805253	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3805254	0.97[ASN][1000 genomes]
rs3805256	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3805257	0.95[ASN][1000 genomes]
rs3828512	0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3828513	0.97[ASN][1000 genomes]
rs3828514	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55758499	0.97[ASN][1000 genomes]
rs55894236	0.97[ASN][1000 genomes]
rs6537154	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6537155	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs713140	0.95[ASN][1000 genomes]
rs719392	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7679870	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7680959	0.87[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs906571	0.97[ASN][1000 genomes]

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144302800-144312600	Weak transcription	Placenta	Placenta
2	chr4:144303000-144312000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:144303000-144318000	Weak transcription	HSMM	muscle
4	chr4:144303200-144311800	Weak transcription	Brain Germinal Matrix	brain
5	chr4:144303200-144312000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr4:144303200-144317800	Weak transcription	Gastric	stomach
7	chr4:144303400-144312000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr4:144303400-144312600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:144303400-144326600	Weak transcription	Colonic Mucosa	Colon
10	chr4:144304000-144310200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr4:144304000-144310600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr4:144304000-144310600	Weak transcription	Hela-S3	cervix
13	chr4:144304200-144320000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr4:144304400-144309600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:144304400-144312000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:144304600-144310000	Weak transcription	HMEC	breast
17	chr4:144304600-144310000	Weak transcription	NHEK	skin
18	chr4:144304600-144311200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr4:144304600-144312600	Weak transcription	HSMMtube	muscle
20	chr4:144304600-144317000	Weak transcription	K562	blood
21	chr4:144305200-144310200	Weak transcription	Liver	Liver
22	chr4:144305200-144311000	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr4:144305200-144311800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr4:144305200-144311800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr4:144305600-144309400	Enhancers	Brain Anterior Caudate	brain
26	chr4:144305800-144310600	Weak transcription	Fetal Stomach	stomach
27	chr4:144306000-144308800	Weak transcription	Esophagus	oesophagus
28	chr4:144306000-144310000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr4:144306000-144312000	Weak transcription	Fetal Muscle Trunk	muscle
30	chr4:144306000-144312000	Weak transcription	Fetal Muscle Leg	muscle
31	chr4:144306000-144312000	Weak transcription	Pancreas	Pancrea
32	chr4:144306200-144310200	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr4:144306200-144311000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr4:144306200-144311200	Enhancers	Brain Angular Gyrus	brain
35	chr4:144306400-144310000	Weak transcription	Osteobl	bone
36	chr4:144306600-144308800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr4:144306600-144310400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr4:144306600-144310400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr4:144306600-144310600	Weak transcription	Adipose Nuclei	Adipose
40	chr4:144306600-144312000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr4:144306600-144318000	Weak transcription	Aorta	Aorta
42	chr4:144306800-144310000	Weak transcription	Fetal Kidney	kidney
43	chr4:144306800-144310000	Weak transcription	Rectal Smooth Muscle	rectum
44	chr4:144306800-144310000	Weak transcription	NHLF	lung
45	chr4:144306800-144310200	Enhancers	Left Ventricle	heart
46	chr4:144306800-144310400	Weak transcription	Stomach Smooth Muscle	stomach
47	chr4:144306800-144310600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr4:144307000-144308800	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr4:144307000-144310000	Weak transcription	NHDF-Ad	bronchial
50	chr4:144307000-144310200	Weak transcription	Colon Smooth Muscle	Colon

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