Variant report

Variant	rs3794090
Chromosome Location	chr11:35323890-35323891
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:35323422..35325913-chr11:35358470..35360620,2	MCF-7	breast:
2	chr11:35294659..35299259-chr11:35323739..35329418,10	MCF-7	breast:
3	chr11:35323596..35326224-chr11:35411777..35414366,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1043101	0.90[EUR][1000 genomes]
rs10742339	0.90[EUR][1000 genomes]
rs10742340	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10742341	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10768118	0.89[EUR][1000 genomes]
rs10768120	0.90[EUR][1000 genomes]
rs10768121	0.90[EUR][1000 genomes]
rs10768122	0.90[EUR][1000 genomes]
rs10768123	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10768126	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10836360	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10836361	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10836362	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10836363	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10836364	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10836367	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10836369	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11033045	0.90[EUR][1000 genomes]
rs11033046	0.90[EUR][1000 genomes]
rs11033048	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11524863	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12361171	0.90[EUR][1000 genomes]
rs12796856	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1570214	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1570215	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17378105	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3088168	0.90[EUR][1000 genomes]
rs35629461	0.90[EUR][1000 genomes]
rs3763888	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3794086	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3794089	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3794091	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3794098	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3794099	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3794100	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3794101	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3794102	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3794103	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3847604	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755394	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4755395	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4756203	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4756204	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4756205	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4756206	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57339940	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6484778	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7105505	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7105690	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7121587	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7946149	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs932633	0.90[EUR][1000 genomes]
rs932635	0.89[EUR][1000 genomes]
rs957350	0.85[EUR][1000 genomes]
rs9633870	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35298200-35326000	Weak transcription	Brain Substantia Nigra	brain
2	chr11:35299000-35326600	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:35299800-35328600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:35302400-35327000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:35302600-35329000	Weak transcription	Brain Angular Gyrus	brain
6	chr11:35304000-35324800	Weak transcription	Liver	Liver
7	chr11:35304600-35326600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:35308000-35324000	Weak transcription	HepG2	liver
9	chr11:35308600-35325800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:35308600-35326400	Weak transcription	Brain Anterior Caudate	brain
11	chr11:35310000-35325800	Weak transcription	Brain Germinal Matrix	brain
12	chr11:35312000-35324000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:35312600-35324000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:35312800-35324000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:35314200-35329200	Weak transcription	Fetal Brain Male	brain
16	chr11:35314800-35327000	Weak transcription	Fetal Stomach	stomach
17	chr11:35315200-35324800	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr11:35317600-35326800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:35317600-35327600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:35318400-35324200	Weak transcription	Pancreas	Pancrea
21	chr11:35318800-35325400	Weak transcription	Fetal Brain Female	brain
22	chr11:35319400-35324000	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr11:35319600-35324000	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr11:35319600-35324000	Weak transcription	NHDF-Ad	bronchial
25	chr11:35320400-35324000	Weak transcription	NHLF	lung
26	chr11:35320400-35325600	Weak transcription	Placenta	Placenta
27	chr11:35322000-35327000	Weak transcription	Aorta	Aorta
28	chr11:35322600-35325000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:35322600-35327400	Enhancers	Adipose Nuclei	Adipose
30	chr11:35322800-35326600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:35323200-35325200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:35323200-35325800	Weak transcription	Colon Smooth Muscle	Colon
33	chr11:35323200-35325800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr11:35323600-35325600	Weak transcription	Stomach Smooth Muscle	stomach
35	chr11:35323800-35324600	Enhancers	Fetal Muscle Leg	muscle

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