Variant report

Variant	rs3794091
Chromosome Location	chr11:35317353-35317354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:35315965..35318862-chr11:35320276..35323684,3	MCF-7	breast:
2	chr11:35317289..35318106-chr11:35387233..35387774,3	MCF-7	breast:
3	chr11:35315251..35317672-chr11:35387334..35389699,2	MCF-7	breast:
4	chr11:35316042..35322702-chr11:35383885..35387953,7	MCF-7	breast:
5	chr11:35315763..35317448-chr11:35338066..35339856,2	MCF-7	breast:
6	chr11:35306755..35309230-chr11:35314818..35317645,2	MCF-7	breast:
7	chr11:35295369..35301669-chr11:35315160..35319353,7	MCF-7	breast:
8	chr11:35315979..35318864-chr11:35345631..35348466,2	MCF-7	breast:
9	chr11:35314441..35321132-chr11:35406351..35414318,9	MCF-7	breast:
10	chr11:35312703..35315109-chr11:35315239..35317407,2	MCF-7	breast:
11	chr11:35303423..35306027-chr11:35316239..35317817,2	MCF-7	breast:
12	chr11:35283225..35285771-chr11:35316550..35319379,2	MCF-7	breast:
13	chr11:35316339..35320306-chr11:35324557..35327417,4	MCF-7	breast:
14	chr11:35316164..35320832-chr11:35323901..35327904,6	MCF-7	breast:
15	chr11:35316062..35317764-chr11:35341517..35344402,2	MCF-7	breast:
16	chr11:35295688..35300934-chr11:35309144..35319083,18	MCF-7	breast:
17	chr11:35302986..35305293-chr11:35316241..35317975,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000110436	Chromatin interaction
ENSG00000255004	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1043101	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10742339	0.92[EUR][1000 genomes]
rs10742340	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10742341	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10768118	0.91[EUR][1000 genomes]
rs10768120	0.92[EUR][1000 genomes]
rs10768121	0.92[EUR][1000 genomes]
rs10768122	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10768123	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10768126	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10836360	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10836361	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10836362	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10836363	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10836364	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10836367	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10836369	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11033045	0.92[EUR][1000 genomes]
rs11033046	0.92[EUR][1000 genomes]
rs11033048	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11524863	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12361171	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12796856	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1570214	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1570215	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17378105	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3088168	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs35629461	0.92[EUR][1000 genomes]
rs3763888	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3794086	0.92[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3794089	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3794090	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3794098	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3794099	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3794100	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3794101	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3794102	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3794103	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3847604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4755394	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4755395	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4756203	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4756204	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4756205	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4756206	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57339940	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6484778	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7105505	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7105690	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7121587	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs736374	0.81[EUR][1000 genomes]
rs7946149	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs932633	0.92[EUR][1000 genomes]
rs932635	0.91[EUR][1000 genomes]
rs957350	0.87[EUR][1000 genomes]
rs9633870	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35298200-35326000	Weak transcription	Brain Substantia Nigra	brain
2	chr11:35299000-35326600	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:35299800-35328600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:35302400-35327000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:35302600-35329000	Weak transcription	Brain Angular Gyrus	brain
6	chr11:35304000-35324800	Weak transcription	Liver	Liver
7	chr11:35304600-35326600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:35308000-35324000	Weak transcription	HepG2	liver
9	chr11:35308600-35325800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:35308600-35326400	Weak transcription	Brain Anterior Caudate	brain
11	chr11:35309800-35318400	Weak transcription	Fetal Brain Female	brain
12	chr11:35310000-35325800	Weak transcription	Brain Germinal Matrix	brain
13	chr11:35312000-35324000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:35312600-35318800	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr11:35312600-35324000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:35312800-35318800	Weak transcription	NHDF-Ad	bronchial
17	chr11:35312800-35324000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:35313400-35321800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr11:35313600-35320200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:35314200-35329200	Weak transcription	Fetal Brain Male	brain
21	chr11:35314400-35318200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr11:35314800-35327000	Weak transcription	Fetal Stomach	stomach
23	chr11:35315200-35324800	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr11:35315800-35319800	Enhancers	Placenta	Placenta
25	chr11:35317000-35317400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr11:35317000-35317600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:35317000-35317600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:35317000-35317800	Enhancers	Pancreas	Pancrea
29	chr11:35317200-35317600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr11:35317200-35317600	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr11:35317200-35317600	Enhancers	Placenta Amnion	Placenta Amnion
32	chr11:35317200-35317800	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr11:35317200-35317800	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links