Variant report

Variant	rs3802531
Chromosome Location	chr10:52516500-52516501
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10761548	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10821684	0.85[AFR][1000 genomes]
rs10821698	1.00[YRI][hapmap]
rs10821706	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10821825	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10821846	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10821854	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10821859	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10994196	0.87[YRI][hapmap]
rs10994492	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16751	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4245009	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4268458	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4531415	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4536153	0.85[AFR][1000 genomes]
rs4550168	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4617537	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4935006	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4935007	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4935191	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4935192	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56033380	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61858572	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6479701	1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7074369	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7089428	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7089955	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7895606	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7913937	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7917358	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895393	chr10:52413720-52530819	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1035197	chr10:52446582-52622349	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1825222	chr10:52477544-52527856	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv948008	chr10:52500270-52536321	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3363512	chr10:52502196-52523494	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3413163	chr10:52502296-52520694	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52501000-52520200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links