Variant report

Variant	rs3803181
Chromosome Location	chr12:51112586-51112587
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10506296	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10735827	0.84[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs10747592	0.85[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs10747593	0.80[ASN][1000 genomes]
rs10783368	1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[EUR][1000 genomes]
rs10783388	0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs10783390	1.00[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap]
rs10876048	0.86[EUR][1000 genomes]
rs10876054	0.86[EUR][1000 genomes]
rs10876082	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10876083	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10876085	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10876088	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10876091	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11169551	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs11169553	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11169556	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12099615	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12296379	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes]
rs12320201	0.86[EUR][1000 genomes]
rs13328926	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1402693	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1521515	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1521517	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1561422	0.84[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs17124888	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17124907	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1815010	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1996750	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2246840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2252595	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2684886	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2684890	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2684891	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2684902	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2684906	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2700486	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28414775	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28479152	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2947617	0.85[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes]
rs3825401	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4129355	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes]
rs4132432	0.82[AMR][1000 genomes]
rs4143663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4306347	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4517607	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4562889	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4768887	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes]
rs4768909	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4768915	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4768920	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56753963	0.90[EUR][1000 genomes]
rs56818625	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57328764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57512759	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58301497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58943330	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59194948	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59284993	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59683461	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60239257	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60494920	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60908906	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61926300	0.84[ASN][1000 genomes]
rs6580766	1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6580767	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6580768	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6580770	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7131993	0.86[EUR][1000 genomes]
rs7132443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7135222	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes]
rs7301125	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes]
rs7302749	0.86[EUR][1000 genomes]
rs7303202	0.82[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7304793	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7306387	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7308872	0.99[ASN][1000 genomes]
rs7310507	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7487150	0.82[ASN][1000 genomes]
rs7487645	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7953880	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7955310	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes]
rs7959129	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs7964642	0.83[ASN][1000 genomes]
rs7969251	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7978443	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7979184	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7979474	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs829125	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs865490	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs939631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs951591	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9634264	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51063200-51138600	Strong transcription	Primary monocytes fromperipheralblood	blood
2	chr12:51063600-51138800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr12:51063600-51145400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr12:51064000-51127400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr12:51067400-51120600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr12:51067400-51143600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr12:51067600-51142200	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr12:51068200-51141200	Strong transcription	Placenta	Placenta
9	chr12:51068200-51144000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:51074600-51139600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr12:51079200-51120600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr12:51080200-51145400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr12:51083400-51126000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr12:51085600-51118400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr12:51086200-51140800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr12:51086200-51142600	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr12:51086400-51113400	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr12:51090400-51145400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr12:51090600-51138400	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr12:51093600-51128600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr12:51096000-51142000	Strong transcription	Fetal Muscle Leg	muscle
22	chr12:51096200-51144600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr12:51096800-51113400	Strong transcription	Duodenum Mucosa	Duodenum
24	chr12:51098800-51128200	Strong transcription	Brain Germinal Matrix	brain
25	chr12:51099600-51117400	Weak transcription	Psoas Muscle	Psoas
26	chr12:51101000-51144800	Strong transcription	Fetal Stomach	stomach
27	chr12:51101200-51114000	Strong transcription	Fetal Intestine Small	intestine
28	chr12:51102000-51116800	Weak transcription	Small Intestine	intestine
29	chr12:51102600-51115000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr12:51102800-51115200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr12:51103000-51114400	Weak transcription	Colonic Mucosa	Colon
32	chr12:51103000-51118400	Weak transcription	NHDF-Ad	bronchial
33	chr12:51103200-51114800	Weak transcription	NHLF	lung
34	chr12:51103600-51115000	Weak transcription	Gastric	stomach
35	chr12:51103800-51115000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr12:51105400-51133600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr12:51107000-51113000	Strong transcription	Fetal Intestine Large	intestine
38	chr12:51107000-51113000	Strong transcription	Fetal Thymus	thymus
39	chr12:51107000-51113400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chr12:51107000-51114000	Strong transcription	Brain Hippocampus Middle	brain
41	chr12:51107200-51112800	Strong transcription	Pancreas	Pancrea
42	chr12:51108000-51120200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr12:51108200-51112800	Strong transcription	Adipose Nuclei	Adipose
44	chr12:51108200-51142200	Strong transcription	Sigmoid Colon	Sigmoid Colon
45	chr12:51108600-51114800	Weak transcription	Right Ventricle	heart
46	chr12:51109400-51114600	Weak transcription	Brain Angular Gyrus	brain
47	chr12:51109400-51115000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr12:51109400-51117400	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr12:51109400-51120400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr12:51109400-51124200	Weak transcription	Stomach Mucosa	stomach

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