The 2.0 version of rSNPBase

Variant report

Variant rs3804648
Chromosome Location chr3:145939691-145939692
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:145910400-145940000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr3:145914600-145940200 Weak transcription Gastric stomach
3 chr3:145914800-145940200 Weak transcription Psoas Muscle Psoas
4 chr3:145914800-145940400 Weak transcription Spleen Spleen
5 chr3:145917800-145940400 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr3:145918000-145940400 Weak transcription Pancreas Pancrea
7 chr3:145918400-145940400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
8 chr3:145920600-145940600 Weak transcription Primary hematopoietic stem cells short term culture blood
9 chr3:145921600-145940200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
10 chr3:145922600-145940400 Weak transcription Lung lung
11 chr3:145924400-145944000 Weak transcription Colon Smooth Muscle Colon
12 chr3:145924400-145945200 Weak transcription HSMMtube muscle
13 chr3:145924600-145940200 Weak transcription Aorta Aorta
14 chr3:145925000-145945600 Weak transcription Cortex derived primary cultured neurospheres brain
15 chr3:145925400-145952800 Weak transcription Primary hematopoietic stem cells blood
16 chr3:145925600-145950800 Weak transcription Fetal Kidney kidney
17 chr3:145932600-145943800 Weak transcription Brain Hippocampus Middle brain
18 chr3:145932800-145941000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
19 chr3:145934000-145940400 Weak transcription Skeletal Muscle Male skeletal muscle
20 chr3:145934600-145940200 Weak transcription Fetal Stomach stomach
21 chr3:145934600-145952200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
22 chr3:145935200-145940400 Weak transcription Fetal Intestine Large intestine
23 chr3:145935200-145940400 Weak transcription Left Ventricle heart
24 chr3:145935600-145940400 Weak transcription Muscle Satellite Cultured Cells --
25 chr3:145935800-145940000 Weak transcription NHLF lung
26 chr3:145936000-145945200 Weak transcription Breast Myoepithelial Primary Cells Breast
27 chr3:145936200-145940400 Weak transcription Skeletal Muscle Female skeletal muscle
28 chr3:145938000-145940000 Enhancers HUVEC blood vessel
29 chr3:145938200-145940400 Enhancers Adipose Nuclei Adipose
30 chr3:145938600-145939800 Enhancers Small Intestine intestine
31 chr3:145938600-145940400 Enhancers Fetal Intestine Small intestine
32 chr3:145938600-145941200 Active TSS HepG2 liver
33 chr3:145938600-145941400 Enhancers Pancreatic Islets Pancreatic Islet
34 chr3:145938800-145940000 Weak transcription Ovary ovary
35 chr3:145938800-145940600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
36 chr3:145938800-145940800 Enhancers Fetal Lung lung
37 chr3:145939000-145939800 Enhancers Stomach Mucosa stomach
38 chr3:145939000-145940600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr3:145939200-145940000 Enhancers Rectal Mucosa Donor 29 rectum
40 chr3:145939200-145940200 Weak transcription Duodenum Smooth Muscle Duodenum
41 chr3:145939200-145940600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
42 chr3:145939200-145940600 Enhancers NHDF-Ad bronchial
43 chr3:145939200-145940800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr3:145939200-145940800 Enhancers Stomach Smooth Muscle stomach
45 chr3:145939200-145940800 Enhancers Hela-S3 cervix
46 chr3:145939400-145939800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
47 chr3:145939400-145939800 Enhancers Liver Liver
48 chr3:145939400-145939800 Weak transcription Fetal Adrenal Gland Adrenal Gland
49 chr3:145939400-145939800 Weak transcription Osteobl bone
50 chr3:145939400-145940000 Weak transcription Rectal Mucosa Donor 31 rectum

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Last update: Aug 31, 2015