Variant report

Variant	rs380564
Chromosome Location	chr11:63318452-63318453
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63317481..63319268-chr11:63322890..63325097,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1043886	0.84[EUR][1000 genomes]
rs11551105	0.92[EUR][1000 genomes]
rs16940507	0.92[EUR][1000 genomes]
rs179356	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs191322	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2765341	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2986320	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs330542	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs330543	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs330544	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs330545	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs330546	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs330547	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs330548	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs330549	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs330551	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs330557	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs330559	0.92[EUR][1000 genomes]
rs330569	0.86[EUR][1000 genomes]
rs330572	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs371162	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3759463	0.92[EUR][1000 genomes]
rs379324	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs389541	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs41275126	0.91[EUR][1000 genomes]
rs41275128	0.94[EUR][1000 genomes]
rs412822	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs422789	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs440771	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61969236	0.82[EUR][1000 genomes]
rs61970483	0.92[EUR][1000 genomes]
rs61970484	0.92[EUR][1000 genomes]
rs61970486	0.90[EUR][1000 genomes]
rs61970489	0.92[EUR][1000 genomes]
rs61970494	0.87[EUR][1000 genomes]
rs9559854	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468588	chr11:63233363-63320239	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv555179	chr11:63233363-63320239	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63305400-63319000	Weak transcription	Aorta	Aorta
2	chr11:63305800-63319200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr11:63306400-63318600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr11:63306400-63318800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr11:63306800-63327600	Weak transcription	Pancreas	Pancrea
6	chr11:63307000-63319000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:63307800-63328200	Weak transcription	Colon Smooth Muscle	Colon
8	chr11:63308800-63318600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr11:63310400-63318800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr11:63310800-63319200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:63311600-63320200	Weak transcription	Primary B cells from cord blood	blood
12	chr11:63311800-63318600	Weak transcription	Primary B cells from peripheral blood	blood
13	chr11:63311800-63319200	Weak transcription	GM12878-XiMat	blood
14	chr11:63312600-63319000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr11:63313000-63320400	Weak transcription	Stomach Mucosa	stomach
16	chr11:63313000-63321000	Weak transcription	Placenta	Placenta
17	chr11:63313600-63328000	Weak transcription	Colonic Mucosa	Colon
18	chr11:63313800-63319400	Weak transcription	Small Intestine	intestine
19	chr11:63314400-63318600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr11:63314600-63318800	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr11:63314800-63318600	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr11:63315000-63318800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr11:63315000-63319200	Weak transcription	Adipose Nuclei	Adipose
24	chr11:63315000-63319200	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr11:63315000-63320400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr11:63315000-63320400	Weak transcription	Spleen	Spleen
27	chr11:63315000-63321200	Weak transcription	Right Ventricle	heart
28	chr11:63315200-63318600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr11:63315200-63319000	Weak transcription	Duodenum Mucosa	Duodenum
30	chr11:63315200-63319200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr11:63315200-63319200	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr11:63315200-63325600	Weak transcription	Lung	lung
33	chr11:63315400-63318600	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr11:63315400-63318600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr11:63315400-63318600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr11:63315400-63318600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr11:63315400-63319000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr11:63315400-63319000	Weak transcription	Thymus	Thymus
39	chr11:63315400-63325800	Weak transcription	Gastric	stomach
40	chr11:63315800-63318600	Weak transcription	Primary T cells from cord blood	blood
41	chr11:63315800-63318600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr11:63317200-63318600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
43	chr11:63317200-63320600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr11:63317400-63318600	Enhancers	Primary T cells fromperipheralblood	blood
45	chr11:63317400-63318600	Weak transcription	HSMMtube	muscle
46	chr11:63317400-63321200	Weak transcription	Brain Angular Gyrus	brain
47	chr11:63317400-63321200	Weak transcription	Brain Substantia Nigra	brain
48	chr11:63317400-63321400	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr11:63317400-63322200	Weak transcription	Brain Anterior Caudate	brain
50	chr11:63317400-63322200	Weak transcription	Brain Hippocampus Middle	brain

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