Variant report

Variant	rs3805896
Chromosome Location	chr6:80985539-80985540
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:80981011..80983271-chr6:80984056..80985676,2	K562	blood:
2	chr6:80985247..80987891-chr6:80991808..80993971,2	K562	blood:
3	chr6:80983811..80985660-chr6:80989530..80991251,2	K562	blood:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1179576	1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs1179577	1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs1184704	1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs11961345	0.83[YRI][hapmap];0.81[AMR][1000 genomes]
rs11961389	0.86[JPT][hapmap]
rs11961412	0.83[YRI][hapmap]
rs11963919	0.93[AMR][1000 genomes]
rs11967081	0.89[GIH][hapmap];0.90[TSI][hapmap]
rs1474790	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs16891629	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2322747	1.00[CHB][hapmap];0.93[CHD][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs28839510	0.81[AMR][1000 genomes]
rs35629704	0.81[AMR][1000 genomes]
rs3805848	0.83[CHB][hapmap]
rs3805862	0.81[AMR][1000 genomes]
rs3805893	0.83[YRI][hapmap]
rs3812123	0.93[GIH][hapmap];0.90[TSI][hapmap]
rs3828750	0.93[GIH][hapmap];0.90[TSI][hapmap]
rs4235811	0.89[CHB][hapmap];0.93[CHD][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs4502885	0.83[CHB][hapmap]
rs4706832	0.89[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs4706833	1.00[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs4706835	0.91[ASN][1000 genomes]
rs4706836	0.91[ASN][1000 genomes]
rs581860	1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs588186	1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs606319	1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs61198482	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs620176	0.94[ASN][1000 genomes]
rs632362	1.00[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs636361	1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs636464	1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs637323	1.00[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs6454151	0.90[ASN][1000 genomes]
rs651314	1.00[CHB][hapmap];0.93[CHD][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs652713	0.94[ASN][1000 genomes]
rs653141	0.94[ASN][1000 genomes]
rs653556	0.94[ASN][1000 genomes]
rs653581	0.94[ASN][1000 genomes]
rs653582	1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs653596	1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs653959	1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs654435	1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs660208	1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs661018	0.94[ASN][1000 genomes]
rs662408	1.00[CHB][hapmap];0.93[CHD][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs666032	1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs668643	0.94[ASN][1000 genomes]
rs676213	0.94[ASN][1000 genomes]
rs676310	1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs678079	0.94[ASN][1000 genomes]
rs689407	1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs6902457	0.92[ASN][1000 genomes]
rs6906392	0.81[AMR][1000 genomes]
rs6906534	1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs6907420	0.94[ASN][1000 genomes]
rs6907781	0.94[ASN][1000 genomes]
rs6927954	1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs6928305	0.94[ASN][1000 genomes]
rs6934902	0.90[ASN][1000 genomes]
rs700490	0.89[CHB][hapmap];0.93[CHD][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs700491	0.89[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs723307	0.89[CHB][hapmap];0.93[CHD][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs73463519	0.81[AMR][1000 genomes]
rs73463522	0.81[AMR][1000 genomes]
rs73463537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73463560	0.81[AMR][1000 genomes]
rs73465567	0.81[AMR][1000 genomes]
rs73465590	0.81[AMR][1000 genomes]
rs73467507	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7740958	0.83[CHB][hapmap]
rs7742286	1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs7747016	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs806840	0.90[ASN][1000 genomes]
rs806843	0.89[CHB][hapmap];0.93[CHD][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs806845	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs806847	1.00[CHB][hapmap];0.93[CHD][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs806848	1.00[CHB][hapmap];0.93[CHD][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs809876	0.89[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs9361594	1.00[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs9443738	0.94[ASN][1000 genomes]
rs9448919	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830708	chr6:80844283-80996876	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv886310	chr6:80880138-81025879	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1033452	chr6:80888667-81000213	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80960600-80997400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:80964800-81002600	Weak transcription	Liver	Liver
3	chr6:80968400-81006800	Weak transcription	Psoas Muscle	Psoas
4	chr6:80981600-80992800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:80984000-80990400	Weak transcription	HSMM	muscle
6	chr6:80985000-80985600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links