Variant report

Variant	rs3807155
Chromosome Location	chr7:138222987-138222988
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10155993	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10215281	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10227693	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10232771	0.88[ASN][1000 genomes]
rs10247380	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10248731	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10258706	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1030961	0.92[ASN][1000 genomes]
rs1077772	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11976614	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.94[TSI][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12112459	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12666310	0.89[ASN][1000 genomes]
rs1363053	0.84[JPT][hapmap]
rs1421604	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1544733	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1616318	0.82[ASN][1000 genomes]
rs1659830	0.80[CEU][hapmap];0.84[MEX][hapmap]
rs1659832	0.88[MEX][hapmap]
rs1673203	0.95[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs1673204	0.91[CHB][hapmap];0.95[CHD][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];0.87[ASN][1000 genomes]
rs1673205	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1673206	0.80[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap];0.96[MEX][hapmap];0.90[ASN][1000 genomes]
rs1673207	0.85[ASN][1000 genomes]
rs17364560	0.85[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17461551	0.85[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1813003	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1874326	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap]
rs2353354	0.80[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap];0.89[ASN][1000 genomes]
rs2353355	0.84[CEU][hapmap];0.91[YRI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3757381	0.90[ASN][1000 genomes]
rs3778705	0.95[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs3807156	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs3807157	0.85[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55723768	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56092804	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57407834	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58562866	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62485261	0.81[EUR][1000 genomes]
rs62485263	0.92[ASN][1000 genomes]
rs62485264	0.91[ASN][1000 genomes]
rs62487613	0.84[EUR][1000 genomes]
rs62487615	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62487616	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62487619	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6467776	0.85[ASN][1000 genomes]
rs6467778	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6467780	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6467782	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6467783	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6944764	0.84[ASN][1000 genomes]
rs6948094	0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs6954285	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6959574	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6963539	0.80[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs6970175	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6974877	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6978524	0.83[EUR][1000 genomes]
rs728092	0.96[ASN][1000 genomes]
rs749546	0.85[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.81[EUR][1000 genomes]
rs7795981	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7808392	0.83[ASN][1000 genomes]
rs888609	0.82[EUR][1000 genomes]
rs9791462	0.95[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9791634	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs985299	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138213000-138223000	Weak transcription	Hela-S3	cervix
2	chr7:138213000-138223200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr7:138213000-138223600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:138213000-138223800	Weak transcription	Stomach Mucosa	stomach
5	chr7:138213000-138224800	Weak transcription	HSMM	muscle
6	chr7:138213000-138225000	Weak transcription	Fetal Brain Male	brain
7	chr7:138213000-138230800	Weak transcription	NHLF	lung
8	chr7:138213000-138234000	Weak transcription	Brain Hippocampus Middle	brain
9	chr7:138213000-138234800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr7:138213000-138235200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr7:138213000-138235600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:138213000-138235800	Weak transcription	Brain Angular Gyrus	brain
13	chr7:138213000-138235800	Weak transcription	Pancreas	Pancrea
14	chr7:138213000-138235800	Weak transcription	NHDF-Ad	bronchial
15	chr7:138213000-138235800	Weak transcription	Osteobl	bone
16	chr7:138213000-138236800	Weak transcription	HSMMtube	muscle
17	chr7:138213000-138238600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr7:138213000-138239400	Weak transcription	Right Atrium	heart
19	chr7:138213000-138244200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr7:138213200-138235800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr7:138213200-138235800	Weak transcription	Colon Smooth Muscle	Colon
22	chr7:138213200-138236000	Weak transcription	Right Ventricle	heart
23	chr7:138213400-138223400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr7:138213400-138225200	Weak transcription	Brain Anterior Caudate	brain
25	chr7:138213600-138223400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr7:138214400-138223200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr7:138214400-138224000	Weak transcription	NH-A	brain
28	chr7:138214600-138223400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr7:138214600-138224000	Weak transcription	A549	lung
30	chr7:138214600-138235800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr7:138214600-138235800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr7:138214600-138235800	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr7:138215000-138223600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr7:138215800-138223200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr7:138215800-138223400	Weak transcription	Left Ventricle	heart
36	chr7:138215800-138223800	Weak transcription	Stomach Smooth Muscle	stomach
37	chr7:138215800-138224000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr7:138215800-138224000	Weak transcription	Ovary	ovary
39	chr7:138215800-138224400	Weak transcription	Brain Germinal Matrix	brain
40	chr7:138215800-138224800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr7:138215800-138235600	Weak transcription	Colonic Mucosa	Colon
42	chr7:138215800-138235800	Weak transcription	Spleen	Spleen
43	chr7:138216000-138223000	Weak transcription	Primary B cells from peripheral blood	blood
44	chr7:138216000-138223400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr7:138216000-138223400	Weak transcription	Fetal Muscle Leg	muscle
46	chr7:138216000-138223400	Weak transcription	Placenta	Placenta
47	chr7:138216000-138223600	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr7:138216000-138223800	Weak transcription	Fetal Lung	lung
49	chr7:138216000-138224000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr7:138216000-138224000	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links