Variant report

Variant	rs3808126
Chromosome Location	chr7:126680633-126680634
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:126678600-126685844..7:127233104-127239235	H1-hESC	embryonic stem cell:	embryo
2	7:126085913-126088095..7:126678600-126685844	K562	blood:
3	7:126678600-126685844..7:127009457-127018926	H1-hESC	embryonic stem cell:	embryo
4	7:126678600-126685844..7:126890676-126899918	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000048405	Chromatin interaction
ENSG00000179603	Chromatin interaction
ENSG00000179562	Chromatin interaction
ENSG00000106328	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1006728	1.00[CEU][hapmap]
rs10225883	0.93[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10252623	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1419446	0.93[CEU][hapmap]
rs17863189	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1894731	0.88[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2237780	0.92[ASN][1000 genomes]
rs2283090	0.87[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2283091	0.88[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2283092	0.87[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2299525	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3808122	1.00[CEU][hapmap]
rs3808127	1.00[CEU][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6467104	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6467105	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6942923	0.88[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6950012	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6964926	1.00[CEU][hapmap]
rs6978939	0.88[CEU][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6979287	0.81[CEU][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7778308	0.94[ASN][1000 genomes]
rs7792406	1.00[CEU][hapmap]
rs951111	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	esv3327508	chr7:126678741-126681489	Weak transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv3395612	chr7:126678991-126681264	Weak transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv3406730	chr7:126679616-126680764	Weak transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126676600-126682000	Weak transcription	Liver	Liver

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