Variant report
| Variant | rs3808145 |
|---|---|
| Chromosome Location | chr7:126475647-126475648 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 7:126474837-126476627..7:126890676-126899918 | H1-hESC | embryonic stem cell: | embryo |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000179603 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs1002744 | 0.81[CHB][hapmap] |
| rs10954138 | 0.81[EUR][1000 genomes] |
| rs1204516 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
| rs1204520 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
| rs1204522 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
| rs1204524 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
| rs1204526 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
| rs1204530 | 0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1204532 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
| rs12670445 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1361987 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1419490 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap] |
| rs2157752 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2237768 | 0.90[CHB][hapmap];0.85[JPT][hapmap] |
| rs2299521 | 0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3808150 | 0.81[CHB][hapmap];0.85[JPT][hapmap] |
| rs3919444 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs412791 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs62470209 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529300 | chr7:125669493-126587858 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1032938 | chr7:126067684-126587859 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv539119 | chr7:126067684-126587859 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv889187 | chr7:126219766-126478190 | Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 5 | esv2761365 | chr7:126452758-126506602 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv608376 | chr7:126457779-126571077 | Enhancers Weak transcription ZNF genes & repeats Active TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
