Variant report

Variant	rs3808148
Chromosome Location	chr7:126458015-126458016
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10251431	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10258445	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs10954138	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11971186	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs1204516	0.84[CEU][hapmap]
rs1204520	0.83[CEU][hapmap]
rs12534101	0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12670445	0.88[EUR][1000 genomes]
rs1361987	0.80[CEU][hapmap]
rs1419448	1.00[CEU][hapmap];0.96[CHB][hapmap];0.86[JPT][hapmap]
rs2157752	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2283075	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs2299521	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3808145	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3919444	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs412791	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62470209	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs916613	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv2761365	chr7:126452758-126506602	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv608376	chr7:126457779-126571077	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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