Variant report

Variant	rs3808150
Chromosome Location	chr7:126386068-126386069
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1008907	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10234189	0.87[EUR][1000 genomes]
rs10808227	1.00[CEU][hapmap]
rs10954134	1.00[CEU][hapmap]
rs10954135	1.00[CEU][hapmap]
rs11978951	0.93[CEU][hapmap]
rs1204516	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs1204520	0.82[JPT][hapmap]
rs1204522	0.82[JPT][hapmap]
rs1204524	0.82[JPT][hapmap]
rs1204526	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs12534101	0.80[AMR][1000 genomes]
rs1361987	0.82[JPT][hapmap]
rs1419490	0.82[JPT][hapmap]
rs1419493	0.87[EUR][1000 genomes]
rs2157752	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs2237762	0.87[EUR][1000 genomes]
rs2237767	0.92[CEU][hapmap]
rs2237768	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2283070	1.00[CEU][hapmap]
rs2299500	0.92[CEU][hapmap]
rs2299521	0.81[AMR][1000 genomes]
rs2402822	0.87[EUR][1000 genomes]
rs2896373	0.80[EUR][1000 genomes]
rs3808145	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs412791	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs4380862	0.87[EUR][1000 genomes]
rs6963108	0.93[CEU][hapmap];0.95[EUR][1000 genomes]
rs6969693	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6974018	0.93[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs737702	0.87[EUR][1000 genomes]
rs756900	0.93[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7779831	0.87[EUR][1000 genomes]
rs7780253	0.82[CEU][hapmap];0.89[EUR][1000 genomes]
rs7784073	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7804521	0.92[CEU][hapmap]
rs886176	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9649507	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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