Variant report

Variant	rs3809449
Chromosome Location	chr14:35514957-35514958
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:35514628-35515821	HepG2	liver:	n/a	n/a
2	POLR2A	chr14:35514901-35516263	GM18505	blood:	n/a	n/a
3	POLR2A	chr14:35514653-35516477	Hela-S3	cervix:	n/a	n/a
4	CREB1	chr14:35514941-35515951	H1-hESC	embryonic stem cell:	n/a	chr14:35515350-35515363
5	PML	chr14:35514592-35516490	GM12878	blood:	n/a	n/a
6	NFIC	chr14:35514737-35516337	HepG2	liver:	n/a	chr14:35516031-35516048
7	TCF7L2	chr14:35514908-35515415	Hela-S3	cervix:	n/a	chr14:35515214-35515221 chr14:35515214-35515223 chr14:35515211-35515225
8	POLR2A	chr14:35514886-35516246	GM12891	blood:	n/a	n/a
9	HDAC2	chr14:35514771-35516381	HepG2	liver:	n/a	chr14:35515085-35515094
10	TBP	chr14:35514918-35515726	GM12878	blood:	n/a	n/a
11	STAT3	chr14:35514859-35515056	MCF10A-Er-Src	breast:	n/a	n/a
12	CEBPB	chr14:35514766-35515598	MCF-7	breast:	n/a	chr14:35514905-35514918
13	EP300	chr14:35514889-35515912	HepG2	liver:	n/a	chr14:35515644-35515660 chr14:35515841-35515850
14	CEBPB	chr14:35514743-35514990	K562	blood:	n/a	chr14:35514905-35514918
15	CREB1	chr14:35514690-35516215	HepG2	liver:	n/a	chr14:35515350-35515363
16	TCF12	chr14:35514849-35516583	A549	lung:	n/a	n/a
17	POLR2A	chr14:35514936-35515972	GM12891	blood:	n/a	n/a
18	BHLHE40	chr14:35514808-35515688	GM12878	blood:	n/a	n/a
19	POLR2A	chr14:35514862-35516202	SK-N-MC	brain:	n/a	n/a
20	MXI1	chr14:35514474-35516758	SK-N-SH	brain:	n/a	n/a
21	MXI1	chr14:35514874-35516342	HepG2	liver:	n/a	n/a
22	POLR2A	chr14:35514696-35516276	HepG2	liver:	n/a	n/a
23	ATF2	chr14:35514853-35515586	GM12878	blood:	n/a	n/a
24	CHD2	chr14:35514865-35516146	K562	blood:	n/a	chr14:35515590-35515600
25	SIN3A	chr14:35514912-35516339	GM12878	blood:	n/a	chr14:35515598-35515607
26	ZC3H11A	chr14:35514868-35515370	K562	blood:	n/a	n/a
27	JUND	chr14:35514932-35516321	SK-N-SH	brain:	n/a	chr14:35515352-35515361
28	CREB1	chr14:35514703-35516433	HepG2	liver:	n/a	chr14:35515350-35515363
29	POLR2A	chr14:35514720-35516180	HepG2	liver:	n/a	n/a
30	CREB1	chr14:35514935-35515665	K562	blood:	n/a	chr14:35515350-35515363
31	POLR2A	chr14:35514870-35516296	Raji	blood:	n/a	n/a
32	ELF1	chr14:35514922-35516290	MCF-7	breast:	n/a	chr14:35515505-35515517 chr14:35515406-35515415
33	BHLHE40	chr14:35514837-35515868	HepG2	liver:	n/a	n/a
34	POLR2A	chr14:35514800-35516341	K562	blood:	n/a	n/a
35	CEBPB	chr14:35514721-35515530	HepG2	liver:	n/a	chr14:35514905-35514918
36	POLR2A	chr14:35514915-35516115	U87	brain:	n/a	n/a
37	JUND	chr14:35514805-35515548	HepG2	liver:	n/a	chr14:35515352-35515361
38	CEBPB	chr14:35514766-35516188	HepG2	liver:	n/a	chr14:35514905-35514918
39	CHD2	chr14:35514770-35516294	GM12878	blood:	n/a	chr14:35515590-35515600
40	CEBPB	chr14:35514747-35515160	A549	lung:	n/a	chr14:35514905-35514918
41	POLR2A	chr14:35514926-35516086	GM12892	blood:	n/a	n/a
42	SMC3	chr14:35514773-35515287	HepG2	liver:	n/a	n/a
43	MYC	chr14:35514814-35516738	K562	blood:	n/a	chr14:35516009-35516019
44	FOS	chr14:35514761-35514996	MCF10A-Er-Src	breast:	n/a	n/a
45	CEBPB	chr14:35514586-35515500	A549	lung:	n/a	chr14:35514905-35514918
46	STAT5A	chr14:35514723-35515400	GM12878	blood:	n/a	chr14:35515150-35515161
47	POLR2A	chr14:35514775-35516130	GM12878	blood:	n/a	n/a
48	POLR2A	chr14:35514843-35516442	Hela-S3	cervix:	n/a	n/a
49	TBP	chr14:35514931-35516314	HepG2	liver:	n/a	n/a
50	STAT3	chr14:35514745-35515421	Hela-S3	cervix:	n/a	chr14:35515150-35515161

No.	Distal block	Cell Line	Cell type
1	chr14:35460081..35462987-chr14:35513991..35516983,2	MCF-7	breast:
2	chr14:35514107..35515830-chr14:35872683..35874428,2	MCF-7	breast:
3	chr14:35513511..35517056-chr14:35517636..35522677,6	K562	blood:
4	chr14:35514228..35515878-chr14:35780242..35782321,2	MCF-7	breast:
5	chr14:35450596..35455465-chr14:35514082..35520003,7	MCF-7	breast:
6	chr14:35450099..35453742-chr14:35513316..35517237,10	K562	blood:
7	chr14:35514347..35516079-chr14:35590063..35591815,2	K562	blood:
8	chr14:35512802..35518057-chr14:35589980..35593805,9	MCF-7	breast:
9	chr14:35449656..35453109-chr14:35514529..35517063,4	MCF-7	breast:
10	chr14:35514347..35518167-chr14:35589018..35591815,3	K562	blood:
11	chr14:35449839..35454578-chr14:35513316..35515954,7	K562	blood:
12	chr14:35342612..35346213-chr14:35514260..35516898,3	K562	blood:
13	chr14:35513731..35517214-chr14:35589119..35593617,5	MCF-7	breast:
14	chr14:35514169..35519549-chr14:35872431..35877872,11	MCF-7	breast:
15	chr14:35514893..35515885-chr2:74692133..74692798,2	Hela-S3	cervix:

Variant related genes	Relation type
FAM177A1	TF binding region
ENSG00000258790	Chromatin interaction
ENSG00000115275	Chromatin interaction
ENSG00000092020	Chromatin interaction
ENSG00000100890	Chromatin interaction
ENSG00000100906	Chromatin interaction
ENSG00000151327	Chromatin interaction
ENSG00000198604	Chromatin interaction
ENSG00000258738	Chromatin interaction
ENSG00000100902	Chromatin interaction
ENSG00000100883	Chromatin interaction
ENSG00000258704	Chromatin interaction

Extended variants
information (count: 127 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs1028449	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1056879	0.82[CHD][hapmap];0.82[JPT][hapmap]
rs11156875	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap]
rs11851907	0.82[JPT][hapmap]
rs12050390	0.87[ASN][1000 genomes]
rs12050402	0.88[ASN][1000 genomes]
rs12050404	0.89[ASN][1000 genomes]
rs12050447	0.89[ASN][1000 genomes]
rs12587376	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12589079	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12589278	0.90[CHB][hapmap]
rs12878219	0.90[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap]
rs12880809	0.86[ASN][1000 genomes]
rs12880928	0.91[ASN][1000 genomes]
rs12881698	0.95[ASN][1000 genomes]
rs12887248	0.93[ASN][1000 genomes]
rs12887779	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12887885	0.90[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap]
rs12890307	0.82[ASN][1000 genomes]
rs12891343	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs12892552	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12893021	0.81[ASN][1000 genomes]
rs12894820	0.81[ASN][1000 genomes]
rs12895051	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.81[ASN][1000 genomes]
rs12896759	0.93[ASN][1000 genomes]
rs17102904	0.81[ASN][1000 genomes]
rs17102923	0.82[ASN][1000 genomes]
rs17102967	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.93[ASN][1000 genomes]
rs17102970	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17103005	0.82[JPT][hapmap]
rs17103104	0.85[CEU][hapmap];0.96[TSI][hapmap]
rs17103120	0.85[CEU][hapmap];0.96[TSI][hapmap]
rs17113838	0.83[CEU][hapmap]
rs1712349	0.86[JPT][hapmap]
rs1967723	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs2010648	0.85[EUR][1000 genomes]
rs2038255	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2143950	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2179890	0.82[CHD][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs2236167	0.82[CHD][hapmap];0.82[JPT][hapmap]
rs2273158	0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.91[ASN][1000 genomes]
rs2383689	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2415260	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2415261	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2415262	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28365850	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28397987	0.82[CHD][hapmap]
rs34286037	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34678475	0.82[ASN][1000 genomes]
rs34737707	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35030792	0.95[ASN][1000 genomes]
rs35090385	0.81[ASN][1000 genomes]
rs35106382	0.81[ASN][1000 genomes]
rs35797365	0.82[ASN][1000 genomes]
rs36112862	0.92[ASN][1000 genomes]
rs4456414	0.80[ASN][1000 genomes]
rs4594164	0.82[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.83[MKK][hapmap];0.96[TSI][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5014384	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56686328	0.89[ASN][1000 genomes]
rs57075379	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57725522	0.83[AMR][1000 genomes]
rs58770366	0.82[ASN][1000 genomes]
rs60693825	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61125355	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61136372	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs62625038	0.98[ASN][1000 genomes]
rs7141292	0.86[ASN][1000 genomes]
rs71421920	0.81[ASN][1000 genomes]
rs71421921	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7142489	0.81[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs7144423	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7144574	0.85[ASN][1000 genomes]
rs7144617	0.95[CHB][hapmap];0.93[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.94[MKK][hapmap];0.88[TSI][hapmap];0.95[ASN][1000 genomes]
rs7144646	0.82[ASN][1000 genomes]
rs7145474	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7145608	0.89[ASN][1000 genomes]
rs7145883	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7149177	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7153068	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7153331	0.94[ASN][1000 genomes]
rs7153550	0.95[CHB][hapmap];0.93[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.82[MKK][hapmap];0.88[TSI][hapmap];0.95[ASN][1000 genomes]
rs7153626	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7154306	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7155696	0.95[ASN][1000 genomes]
rs7156322	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7158416	0.82[JPT][hapmap]
rs7159324	0.85[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.93[MEX][hapmap];0.88[TSI][hapmap]
rs7160160	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72680650	0.82[ASN][1000 genomes]
rs74046408	0.91[ASN][1000 genomes]
rs799664	0.86[JPT][hapmap]
rs8006583	0.82[ASN][1000 genomes]
rs8007274	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8009093	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8013540	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014327	0.81[ASN][1000 genomes]
rs8014377	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8015622	0.95[ASN][1000 genomes]
rs8017191	0.91[ASN][1000 genomes]
rs8017225	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.94[MKK][hapmap];0.91[ASN][1000 genomes]
rs8018114	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs8019179	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs932473	0.86[JPT][hapmap]
rs941653	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9671773	0.82[CHD][hapmap];0.82[JPT][hapmap]
rs9672061	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901602	chr14:35367889-35571651	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv949617	chr14:35379923-35825436	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv1043470	chr14:35398522-35754029	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	nsv542031	chr14:35398522-35754029	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
5	nsv901607	chr14:35449467-35540764	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
6	nsv901608	chr14:35449467-35571651	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
7	nsv901609	chr14:35449467-35587767	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv456204	chr14:35466584-35556498	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
9	nsv564263	chr14:35466584-35556498	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
10	nsv901611	chr14:35470049-35540764	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
11	nsv901612	chr14:35470049-35571651	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	nsv901613	chr14:35470049-35587767	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
13	nsv1239	chr14:35477657-35522987	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
14	nsv564264	chr14:35482797-35732369	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
15	nsv901614	chr14:35485748-35571651	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
16	nsv901615	chr14:35485748-35630175	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
17	nsv870305	chr14:35488290-35852349	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
18	nsv1043801	chr14:35493065-35539399	Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
19	nsv1052800	chr14:35509858-35607117	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
20	nsv1044515	chr14:35510785-35756317	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
21	nsv564265	chr14:35512335-35624831	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs3809449	PPP2R3C	Cis_1M	lymphoblastoid	RTeQTL
rs3809449	PPP2R3C	cis	Whole Blood	GTEx
rs3809449	PPP2R3C	cis	lymphoblastoid	seeQTL
rs3809449	KIAA0391	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35504000-35515000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr14:35514200-35515200	Flanking Active TSS	Primary hematopoietic stem cells	blood
3	chr14:35514200-35515200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr14:35514200-35516400	Active TSS	Brain Cingulate Gyrus	brain
5	chr14:35514200-35516600	Active TSS	Brain Angular Gyrus	brain
6	chr14:35514200-35516600	Active TSS	Brain Hippocampus Middle	brain
7	chr14:35514200-35516600	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr14:35514400-35515000	Flanking Active TSS	Primary B cells from cord blood	blood
9	chr14:35514400-35515000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
10	chr14:35514400-35515000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
11	chr14:35514400-35515000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr14:35514400-35515000	Flanking Active TSS	Fetal Heart	heart
13	chr14:35514400-35515000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
14	chr14:35514400-35515000	Weak transcription	Small Intestine	intestine
15	chr14:35514400-35515000	Flanking Active TSS	A549	lung
16	chr14:35514400-35515200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr14:35514400-35515200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
18	chr14:35514400-35515200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr14:35514400-35515200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr14:35514400-35515200	Flanking Active TSS	Hela-S3	cervix
21	chr14:35514400-35515200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr14:35514400-35515200	Flanking Active TSS	NH-A	brain
23	chr14:35514400-35516200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr14:35514400-35516600	Active TSS	ES-I3 Cell Line	embryonic stem cell
25	chr14:35514400-35516600	Active TSS	iPS-15b Cell Line	embryonic stem cell
26	chr14:35514400-35516800	Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr14:35514400-35517000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr14:35514400-35517000	Active TSS	K562	blood
29	chr14:35514400-35517600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr14:35514400-35517600	Active TSS	Pancreatic Islets	Pancreatic Islet
31	chr14:35514600-35515000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr14:35514600-35515000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr14:35514600-35515000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr14:35514600-35515000	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr14:35514600-35515000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
36	chr14:35514600-35515000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
37	chr14:35514600-35515000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
38	chr14:35514600-35515000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
39	chr14:35514600-35515000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
40	chr14:35514600-35515000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
41	chr14:35514600-35515000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr14:35514600-35515000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr14:35514600-35515000	Flanking Active TSS	Liver	Liver
44	chr14:35514600-35515000	Flanking Active TSS	Brain Anterior Caudate	brain
45	chr14:35514600-35515000	Flanking Active TSS	Duodenum Mucosa	Duodenum
46	chr14:35514600-35515000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
47	chr14:35514600-35515000	Flanking Active TSS	Fetal Kidney	kidney
48	chr14:35514600-35515000	Enhancers	Placenta Amnion	Placenta Amnion
49	chr14:35514600-35515000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
50	chr14:35514600-35515000	Flanking Active TSS	HSMMtube	muscle

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