Variant report

Variant	rs3810006
Chromosome Location	chr18:28897265-28897266
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11664391	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs11665531	0.91[YRI][hapmap];0.88[AFR][1000 genomes]
rs16961644	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs16961651	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs16961653	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs2912330	0.85[JPT][hapmap]
rs41326652	0.96[GIH][hapmap];0.89[LWK][hapmap];0.89[MEX][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs7236477	0.96[GIH][hapmap];0.89[LWK][hapmap];0.89[MEX][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066692	chr18:28856066-29190505	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv543674	chr18:28856066-29190505	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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