Variant report

Variant	rs3810174
Chromosome Location	chr19:41904165-41904166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr19:41902968-41904180	H1-hESC	embryonic stem cell:	n/a	chr19:41903275-41903289 chr19:41903722-41903742
2	MYC	chr19:41902423-41905263	A549	lung:	n/a	chr19:41903346-41903356 chr19:41903242-41903252 chr19:41903244-41903251 chr19:41903241-41903256 chr19:41903347-41903354 chr19:41903243-41903252 chr19:41903346-41903355 chr19:41903349-41903357 chr19:41903346-41903355
3	MAX	chr19:41902761-41904223	HCT-116	colon:	n/a	chr19:41903346-41903356 chr19:41903242-41903252 chr19:41903244-41903251 chr19:41903241-41903256 chr19:41903347-41903354 chr19:41903243-41903252 chr19:41903346-41903355 chr19:41903349-41903357 chr19:41903346-41903355
4	EP300	chr19:41902731-41904208	A549	lung:	n/a	n/a
5	MYC	chr19:41902878-41904246	K562	blood:	n/a	chr19:41903346-41903356 chr19:41903242-41903252 chr19:41903244-41903251 chr19:41903241-41903256 chr19:41903347-41903354 chr19:41903243-41903252 chr19:41903346-41903355 chr19:41903349-41903357 chr19:41903346-41903355
6	BCL3	chr19:41902776-41904253	A549	lung:	n/a	chr19:41903264-41903273 chr19:41903275-41903288
7	EP300	chr19:41902776-41904270	A549	lung:	n/a	chr19:41904248-41904262
8	SP1	chr19:41902805-41904241	A549	lung:	n/a	chr19:41903386-41903397 chr19:41903376-41903388 chr19:41903387-41903401
9	MXI1	chr19:41902656-41904646	IMR90	lung:	n/a	chr19:41903347-41903356
10	TAF1	chr19:41902950-41904187	ECC-1	luminal epithelium:	n/a	n/a
11	NR2F2	chr19:41902987-41904207	K562	blood:	n/a	n/a
12	EBF1	chr19:41903045-41904249	GM12878	blood:	n/a	n/a
13	MAZ	chr19:41902804-41904449	IMR90	lung:	n/a	chr19:41903346-41903356 chr19:41903242-41903252 chr19:41903244-41903251 chr19:41903241-41903256 chr19:41903347-41903354 chr19:41903243-41903252 chr19:41903346-41903355 chr19:41903349-41903357 chr19:41903346-41903355
14	REST	chr19:41902798-41904274	A549	lung:	n/a	n/a
15	MXI1	chr19:41902249-41904351	SK-N-SH	brain:	n/a	chr19:41903347-41903356
16	REST	chr19:41902765-41904326	A549	lung:	n/a	n/a
17	BCL3	chr19:41902714-41904265	A549	lung:	n/a	chr19:41903264-41903273 chr19:41903275-41903288
18	TCF12	chr19:41902735-41904415	A549	lung:	n/a	n/a
19	SIN3A	chr19:41902805-41904301	H1-hESC	embryonic stem cell:	n/a	n/a
20	GATA3	chr19:41902782-41904165	A549	lung:	n/a	n/a
21	SIN3AK20	chr19:41902712-41904306	A549	lung:	n/a	n/a
22	SP1	chr19:41902747-41904298	A549	lung:	n/a	chr19:41902750-41902764 chr19:41902747-41902759 chr19:41903386-41903397 chr19:41903376-41903388 chr19:41903387-41903401 chr19:41902748-41902758 chr19:41902748-41902757
23	REST	chr19:41902768-41904215	H1-neurons	neurons:	n/a	n/a
24	YY1	chr19:41902910-41904178	GM12878	blood:	n/a	chr19:41903275-41903289 chr19:41903722-41903742
25	YY1	chr19:41903045-41904389	SK-N-SH	brain:	n/a	chr19:41903275-41903289 chr19:41903722-41903742
26	SIN3AK20	chr19:41902817-41904193	MCF-7	breast:	n/a	n/a
27	YY1	chr19:41903037-41904199	SK-N-SH_RA	brain:	n/a	chr19:41903275-41903289 chr19:41903722-41903742
28	YY1	chr19:41903024-41904230	SK-N-SH	brain:	n/a	chr19:41903275-41903289 chr19:41903722-41903742
29	SIN3AK20	chr19:41902677-41904214	MCF-7	breast:	n/a	n/a
30	CHD1	chr19:41903046-41904503	GM12878	blood:	n/a	n/a
31	FOSL2	chr19:41902794-41904426	A549	lung:	n/a	n/a
32	MAX	chr19:41902622-41904412	A549	lung:	n/a	chr19:41903346-41903356 chr19:41903242-41903252 chr19:41903244-41903251 chr19:41903241-41903256 chr19:41903347-41903354 chr19:41903243-41903252 chr19:41903346-41903355 chr19:41903349-41903357 chr19:41903346-41903355
33	YY1	chr19:41902838-41904283	A549	lung:	n/a	chr19:41903275-41903289 chr19:41903722-41903742
34	JUN	chr19:41902375-41904298	K562	blood:	n/a	n/a
35	SIX5	chr19:41902666-41904297	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr19:41899828..41905293-chr19:41906916..41917787,16	MCF-7	breast:
2	chr19:41903791..41906982-chr19:41915611..41919642,3	K562	blood:
3	chr19:41856329..41860180-chr19:41901826..41904297,4	K562	blood:
4	chr19:41767651..41769904-chr19:41902855..41905283,2	K562	blood:
5	chr19:41903201..41905318-chr19:41918567..41921516,2	MCF-7	breast:
6	chr19:41902636..41905103-chr19:41930716..41934044,4	MCF-7	breast:
7	chr19:41855447..41861218-chr19:41901143..41905435,7	MCF-7	breast:
8	chr19:41856174..41858570-chr19:41902142..41904818,3	MCF-7	breast:
9	chr19:41868160..41871597-chr19:41899998..41904284,10	K562	blood:
10	chr19:41868161..41871707-chr19:41902716..41905358,4	MCF-7	breast:
11	chr19:41901938..41905441-chr19:41944047..41947443,5	K562	blood:
12	chr19:41903473..41906087-chr19:41945278..41947256,2	MCF-7	breast:
13	chr19:41901991..41905119-chr19:41933008..41936084,3	MCF-7	breast:
14	chr19:41855237..41861298-chr19:41901562..41905286,5	K562	blood:
15	chr19:41903342..41904945-chr19:41934241..41936024,2	MCF-7	breast:
16	chr19:41902654..41904815-chr19:41927221..41929015,2	K562	blood:

Variant related genes	Relation type
ENSG00000268987	TF binding region
EXOSC5	TF binding region
ENSG00000105329	Chromatin interaction
ENSG00000105323	Chromatin interaction
ENSG00000268475	Chromatin interaction
ENSG00000123810	Chromatin interaction
ENSG00000248098	Chromatin interaction
ENSG00000105341	Chromatin interaction
ENSG00000142046	Chromatin interaction
ENSG00000255730	Chromatin interaction
ENSG00000177191	Chromatin interaction

Extended variants
information (count: 102 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10409485	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10413735	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10416743	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10417311	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10417997	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10420556	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10422783	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10422956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10432268	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1043413	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1046909	0.86[CHD][hapmap]
rs1077856	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10853751	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11083618	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11083619	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11667848	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11667908	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11668924	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11670583	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11670668	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11670725	0.91[EUR][1000 genomes]
rs11670757	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11880539	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11883104	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12602	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12709849	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12980966	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12982607	0.83[ASN][1000 genomes]
rs13344547	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.87[JPT][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13344563	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13345590	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13346603	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1473248	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs166925	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16975238	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17318596	1.00[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17318666	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1967333	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1967334	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2231935	0.80[CEU][hapmap]
rs2231940	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.87[JPT][hapmap];0.89[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2241706	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2241707	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2241708	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2241709	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2241710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2241711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2288871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2304242	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2304243	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2317131	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2569400	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2569754	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs284648	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs284649	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs284650	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs284651	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs284652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs284654	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs284655	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs284656	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs284657	0.87[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs284658	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs284660	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs284661	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs284662	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs284663	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3213860	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3213861	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3745290	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3745292	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3786553	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3810175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3816037	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3826713	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4605279	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4674	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4802116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4802117	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4802118	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4803461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4803462	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4803463	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4803465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4803467	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4803468	0.90[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4803469	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55986560	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58961854	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62117461	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62117462	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6508977	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7247332	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7255918	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7258973	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8103531	0.95[EUR][1000 genomes]
rs8105450	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8105833	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs878082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs878083	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs892044	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9304593	0.92[CEU][hapmap];1.00[CHB][hapmap];0.98[GIH][hapmap];0.87[JPT][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs3810174	PHLDB3	cis	parietal	SCAN
rs3810174	MEGF8	cis	parietal	SCAN
rs3810174	CNFN	cis	lymphoblastoid	seeQTL
rs3810174	B3GNT8	cis	Nerve Tibial	GTEx
rs3810174	LHB	cis	parietal	SCAN
rs3810174	BCKDHA	trans	parietal	SCAN
rs3810174	NOSIP	cis	parietal	SCAN
rs3810174	ATP5SL	cis	lymphoblastoid	seeQTL
rs3810174	PSG2	cis	parietal	SCAN
rs3810174	ZNF233	cis	cerebellum	SCAN
rs3810174	PVR	cis	parietal	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41901600-41904200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr19:41901800-41904400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr19:41902000-41904400	Active TSS	Hela-S3	cervix
4	chr19:41902000-41904600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr19:41902200-41904400	Active TSS	H1 Cell Line	embryonic stem cell
6	chr19:41902200-41904400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr19:41902200-41904400	Active TSS	HSMM	muscle
8	chr19:41902200-41904600	Active TSS	Pancreas	Pancrea
9	chr19:41902200-41904600	Active TSS	GM12878-XiMat	blood
10	chr19:41902200-41904600	Active TSS	K562	blood
11	chr19:41902200-41905200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr19:41902400-41904200	Active TSS	Placenta Amnion	Placenta Amnion
13	chr19:41902400-41904400	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr19:41902400-41904400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr19:41902400-41904400	Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr19:41902400-41904400	Active TSS	iPS-18 Cell Line	embryonic stem cell
17	chr19:41902400-41904400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr19:41902400-41904400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr19:41902400-41904400	Active TSS	Brain Cingulate Gyrus	brain
20	chr19:41902400-41904400	Active TSS	Brain Germinal Matrix	brain
21	chr19:41902400-41904400	Active TSS	Colonic Mucosa	Colon
22	chr19:41902400-41904400	Active TSS	Fetal Intestine Small	intestine
23	chr19:41902400-41904400	Active TSS	Fetal Kidney	kidney
24	chr19:41902400-41904400	Active TSS	Right Ventricle	heart
25	chr19:41902400-41904600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr19:41902400-41904600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
27	chr19:41902400-41904600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr19:41902400-41904600	Active TSS	Fetal Intestine Large	intestine
29	chr19:41902400-41904600	Active TSS	Psoas Muscle	Psoas
30	chr19:41902400-41904800	Active TSS	iPS-20b Cell Line	embryonic stem cell
31	chr19:41902400-41905000	Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr19:41902400-41905000	Active TSS	HUES6 Cell Line	embryonic stem cell
33	chr19:41902400-41905000	Active TSS	Ovary	ovary
34	chr19:41902400-41905200	Active TSS	HUES64 Cell Line	embryonic stem cell
35	chr19:41902600-41904200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr19:41902600-41904200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr19:41902600-41904200	Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr19:41902600-41904200	Active TSS	Fetal Brain Male	brain
39	chr19:41902600-41904200	Active TSS	Thymus	Thymus
40	chr19:41902600-41904400	Active TSS	Primary T killer memory cells from peripheral blood	blood
41	chr19:41902600-41904400	Active TSS	Brain Hippocampus Middle	brain
42	chr19:41902600-41904400	Active TSS	Esophagus	oesophagus
43	chr19:41902600-41904400	Active TSS	Fetal Brain Female	brain
44	chr19:41902600-41904400	Active TSS	Pancreatic Islets	Pancreatic Islet
45	chr19:41902600-41904400	Active TSS	Right Atrium	heart
46	chr19:41902600-41904400	Active TSS	HSMMtube	muscle
47	chr19:41902600-41904600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr19:41902600-41904600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
49	chr19:41902600-41904600	Active TSS	Breast Myoepithelial Primary Cells	Breast
50	chr19:41902600-41904600	Active TSS	Fetal Muscle Trunk	muscle

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Variant report

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