Variant report

Variant	rs3811076
Chromosome Location	chr6:100911895-100911896
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTBP2	chr6:100911510-100912473	H1-hESC	embryonic stem cell:	n/a	n/a
2	CHD2	chr6:100911573-100911900	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr6:100907654-100912316	H1-neurons	neurons:	n/a	n/a
4	TCF12	chr6:100911482-100911898	H1-hESC	embryonic stem cell:	n/a	n/a
5	SUZ12	chr6:100910832-100914607	NT2-D1	testis:	n/a	n/a
6	TCF12	chr6:100911644-100911984	H1-hESC	embryonic stem cell:	n/a	n/a
7	ZNF263	chr6:100911621-100913246	HEK293-T-REx	kidney:	n/a	n/a
8	BRCA1	chr6:100911583-100911905	H1-hESC	embryonic stem cell:	n/a	n/a
9	POLR2A	chr6:100911022-100912542	H1-neurons	neurons:	n/a	n/a
10	SUZ12	chr6:100911573-100912739	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
SIM1	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17060639	1.00[EUR][1000 genomes]
rs3798486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570783	0.81[ASN][1000 genomes]
rs6907169	0.91[EUR][1000 genomes]
rs6928357	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1028122	chr6:100774245-100964347	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1023710	chr6:100810738-101001115	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv538388	chr6:100810738-101001115	Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100902000-100913600	Active TSS	Psoas Muscle	Psoas
2	chr6:100906600-100914200	Bivalent/Poised TSS	Fetal Kidney	kidney
3	chr6:100906800-100914400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:100906800-100914600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:100907400-100913600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:100908000-100913600	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:100908000-100913800	Bivalent/Poised TSS	NHDF-Ad	bronchial
8	chr6:100908000-100914800	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr6:100908400-100913800	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:100908600-100913400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:100908600-100913400	Active TSS	HSMM	muscle
12	chr6:100908600-100913600	Active TSS	HSMMtube	muscle
13	chr6:100908800-100914000	Active TSS	Muscle Satellite Cultured Cells	--
14	chr6:100911000-100912000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:100911000-100912200	Active TSS	Pancreas	Pancrea
16	chr6:100911000-100914400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
17	chr6:100911000-100914600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:100911200-100912000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
19	chr6:100911200-100913000	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
20	chr6:100911200-100913400	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
21	chr6:100911400-100912000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
22	chr6:100911400-100912200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
23	chr6:100911600-100912000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
24	chr6:100911600-100912000	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
25	chr6:100911600-100912200	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
26	chr6:100911600-100912200	Bivalent Enhancer	HUVEC	blood vessel
27	chr6:100911600-100912400	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:100911600-100913000	Bivalent/Poised TSS	Placenta Amnion	Placenta Amnion
29	chr6:100911600-100913400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
30	chr6:100911800-100912000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
31	chr6:100911800-100912000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
32	chr6:100911800-100912000	Bivalent Enhancer	Brain Cingulate Gyrus	brain
33	chr6:100911800-100912200	Bivalent Enhancer	Fetal Brain Male	brain
34	chr6:100911800-100912200	Enhancers	Right Ventricle	heart
35	chr6:100911800-100912200	Bivalent Enhancer	NHEK	skin
36	chr6:100911800-100912800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr6:100911800-100912800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
38	chr6:100911800-100912800	Bivalent Enhancer	HMEC	breast
39	chr6:100911800-100913000	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr6:100911800-100913200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
41	chr6:100911800-100913400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
42	chr6:100911800-100913400	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr6:100911800-100913400	ZNF genes & repeats	Lung	lung
44	chr6:100911800-100913600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
45	chr6:100911800-100913600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
46	chr6:100911800-100913600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
47	chr6:100911800-100914200	ZNF genes & repeats	Spleen	Spleen
48	chr6:100911800-100916000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood

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