Variant report

Variant	rs3811393
Chromosome Location	chr1:211305873-211305874
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1338352	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1338354	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1338355	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1416066	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1538288	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1577986	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1591746	0.81[ASN][1000 genomes]
rs2066025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2211040	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3111222	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3111223	0.80[ASN][1000 genomes]
rs3120779	0.80[ASN][1000 genomes]
rs4951505	0.82[EUR][1000 genomes]
rs6665927	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7532201	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7548416	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211301000-211306000	Weak transcription	A549	lung
2	chr1:211301200-211306000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr1:211302600-211307800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:211303800-211307800	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr1:211304000-211307600	Active TSS	Brain Angular Gyrus	brain
6	chr1:211304200-211306200	Weak transcription	Brain Substantia Nigra	brain
7	chr1:211305200-211307600	Active TSS	Brain Anterior Caudate	brain
8	chr1:211305200-211307800	Active TSS	HSMMtube	muscle
9	chr1:211305400-211306000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:211305400-211307800	Active TSS	HSMM	muscle
11	chr1:211305600-211306000	Active TSS	Brain Hippocampus Middle	brain
12	chr1:211305800-211306000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:211305800-211306000	Enhancers	Brain Cingulate Gyrus	brain
14	chr1:211305800-211306200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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