Variant report

Variant	rs381145
Chromosome Location	chr7:101730283-101730284
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs365397	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs366345	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs367773	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs370760	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs372321	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs372711	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs372989	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs375417	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs376183	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs377587	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs377612	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs379347	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs380934	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs384436	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs393074	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs396162	1.00[CHB][hapmap]
rs402294	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs403883	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs404523	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs405073	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs405141	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs406012	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs409420	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs411844	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs412332	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs412524	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs413348	1.00[ASN][1000 genomes]
rs420709	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs421154	1.00[ASN][1000 genomes]
rs421430	0.94[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs425577	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4294126	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs430154	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs431821	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs432002	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs432600	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs436090	1.00[CHB][hapmap]
rs438908	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs441160	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs443159	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs443293	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4729771	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56960461	0.90[AFR][1000 genomes]
rs57164493	0.90[AFR][1000 genomes]
rs58868901	0.88[AFR][1000 genomes]
rs73185898	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408006	0.90[AFR][1000 genomes]
rs965863	1.00[CHB][hapmap]

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101707200-101738000	Weak transcription	Colon Smooth Muscle	Colon
2	chr7:101708200-101765000	Weak transcription	Small Intestine	intestine
3	chr7:101715200-101749800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr7:101715400-101749600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr7:101715600-101745200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr7:101715600-101745200	Weak transcription	HSMMtube	muscle
7	chr7:101715800-101732600	Weak transcription	Fetal Kidney	kidney
8	chr7:101715800-101732800	Weak transcription	Aorta	Aorta
9	chr7:101715800-101741000	Weak transcription	Gastric	stomach
10	chr7:101715800-101741200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:101716000-101736600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr7:101716000-101743000	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr7:101716000-101746600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr7:101716400-101758600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr7:101717800-101741200	Weak transcription	Pancreas	Pancrea
16	chr7:101718000-101732800	Weak transcription	Esophagus	oesophagus
17	chr7:101718600-101736600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr7:101720800-101732600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr7:101723400-101732600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr7:101723400-101732800	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr7:101723600-101732800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr7:101723800-101732400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr7:101723800-101735600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr7:101723800-101736800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr7:101723800-101740200	Weak transcription	HepG2	liver
26	chr7:101724000-101735400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr7:101724000-101741600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:101724400-101732600	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr7:101724400-101740000	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr7:101724600-101730400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr7:101724600-101732400	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr7:101725400-101732800	Weak transcription	Lung	lung
33	chr7:101725400-101738800	Weak transcription	Fetal Thymus	thymus
34	chr7:101725400-101740400	Weak transcription	Left Ventricle	heart
35	chr7:101725600-101732800	Weak transcription	Ovary	ovary
36	chr7:101725600-101732800	Weak transcription	Spleen	Spleen
37	chr7:101725600-101736600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr7:101725600-101740800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr7:101725600-101741000	Weak transcription	Right Ventricle	heart
40	chr7:101725600-101741200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr7:101726000-101732600	Weak transcription	Thymus	Thymus
42	chr7:101726000-101732800	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr7:101726000-101735600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr7:101726000-101736600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr7:101726200-101736800	Weak transcription	Fetal Heart	heart
46	chr7:101726200-101741000	Weak transcription	Liver	Liver
47	chr7:101726200-101747800	Weak transcription	Osteobl	bone
48	chr7:101726600-101733200	Weak transcription	Hela-S3	cervix
49	chr7:101727000-101735600	Weak transcription	Placenta	Placenta
50	chr7:101727000-101736800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links