Variant report

Variant	rs3812152
Chromosome Location	chr6:80775330-80775331
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10943688	0.89[JPT][hapmap]
rs1205577	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1205579	0.95[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12193074	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1410521	0.89[JPT][hapmap]
rs1410522	0.89[JPT][hapmap]
rs151583	0.88[AMR][1000 genomes]
rs151587	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs151588	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs151641	0.88[AMR][1000 genomes]
rs151644	0.88[AMR][1000 genomes]
rs151648	0.85[AMR][1000 genomes]
rs151654	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs151656	0.89[AMR][1000 genomes]
rs151658	0.95[CHB][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs151661	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs151662	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs151663	0.95[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs151664	0.95[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs151665	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs181177	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1927426	0.89[JPT][hapmap]
rs2251783	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2251790	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs239496	0.88[AMR][1000 genomes]
rs239498	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs239501	0.88[AMR][1000 genomes]
rs239502	0.88[AMR][1000 genomes]
rs239511	0.85[AMR][1000 genomes]
rs239515	0.85[AMR][1000 genomes]
rs239552	0.95[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs239553	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs239554	0.95[CHB][hapmap];0.92[CHD][hapmap];0.83[JPT][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs239555	0.95[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs239558	0.95[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs239562	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs239563	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs239566	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs239567	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs239568	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs239569	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs239570	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs239571	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs239572	0.95[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs239573	0.85[AMR][1000 genomes]
rs239574	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs239575	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs239576	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs239577	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs239579	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs239580	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs239581	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs239582	0.94[CHB][hapmap];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs239583	0.96[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs239584	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs239585	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs239586	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs239587	0.95[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs239588	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs239589	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs239590	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs240212	0.95[CHB][hapmap];0.83[JPT][hapmap];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs240213	0.94[CHB][hapmap];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs240216	0.95[CHB][hapmap];0.83[JPT][hapmap];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs240224	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs240225	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs240226	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs240228	0.95[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs240229	0.95[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs240237	0.88[AMR][1000 genomes]
rs240238	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2757083	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs402128	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4386773	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4706827	0.89[JPT][hapmap]
rs591012	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61794	0.89[CHB][hapmap];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61795	0.95[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61796	0.95[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs621506	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs642745	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs648845	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs653665	0.95[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs667871	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs669278	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs672372	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs681405	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs681435	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs681931	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs683167	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6917725	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6924930	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6930227	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6934606	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6935728	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7745127	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7759915	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9294169	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9343958	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9343959	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9343960	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9343965	0.89[JPT][hapmap]
rs9352791	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9352792	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9352793	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9352794	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9359407	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9361581	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9443730	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9448875	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9448876	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981160	chr6:80772505-80775545	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3812152	ELOVL4	cis	Artery Tibial	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80764600-80777200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:80764800-80784400	Weak transcription	Thymus	Thymus

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