Variant report

Variant	rs3812915
Chromosome Location	chr15:77320487-77320488
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr15:77320199-77320808	K562	blood:	n/a	chr15:77320716-77320725
2	ZBTB7A	chr15:77320444-77320811	K562	blood:	n/a	n/a
3	POLR2A	chr15:77320435-77330647	HL-60	blood:	n/a	n/a
4	SP4	chr15:77320397-77320717	H1-hESC	embryonic stem cell:	n/a	n/a
5	GABPA	chr15:77320148-77320547	H1-hESC	embryonic stem cell:	n/a	n/a
6	BHLHE40	chr15:77320463-77320709	K562	blood:	n/a	chr15:77320651-77320667
7	HMGN3	chr15:77320252-77321057	K562	blood:	n/a	n/a
8	SIN3A	chr15:77320367-77320709	H1-hESC	embryonic stem cell:	n/a	n/a
9	IRF1	chr15:77320376-77320829	K562	blood:	n/a	chr15:77320647-77320661
10	UBTF	chr15:77320373-77320847	K562	blood:	n/a	n/a
11	NR3C1	chr15:77319812-77320559	A549	lung:	n/a	chr15:77320115-77320131 chr15:77320115-77320131 chr15:77320116-77320130
12	BACH1	chr15:77320425-77320611	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77320466..77323005-chr15:77324460..77327682,3	MCF-7	breast:

Variant related genes	Relation type
PSTPIP1	TF binding region
ENSG00000140368	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10152353	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11636266	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11854745	1.00[EUR][1000 genomes]
rs11855392	0.85[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11858480	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11858973	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16968616	1.00[CHB][hapmap]
rs16968660	1.00[EUR][1000 genomes]
rs3812916	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55775608	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74025047	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	esv2758388	chr15:77170550-77373448	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv2760041	chr15:77170550-77373448	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv833058	chr15:77235895-77393640	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv517068	chr15:77254544-77381222	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	esv1808532	chr15:77257714-77332539	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1035874	chr15:77266776-77328742	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv1822592	chr15:77283956-77332539	Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv570111	chr15:77286693-77332606	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv1048833	chr15:77294593-77339260	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	esv1848501	chr15:77301357-77327571	Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv1804890	chr15:77302969-77332482	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	esv1836749	chr15:77302969-77332606	Genic enhancers Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
16	nsv904414	chr15:77304310-77400388	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
17	esv1842687	chr15:77307260-77332606	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77307400-77322400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:77307800-77320800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr15:77308800-77327600	Weak transcription	Esophagus	oesophagus
4	chr15:77312200-77328400	Weak transcription	Aorta	Aorta
5	chr15:77313000-77327800	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr15:77313400-77327200	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr15:77314400-77320800	Weak transcription	Gastric	stomach
8	chr15:77314600-77328000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr15:77314800-77320600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:77314800-77322000	Weak transcription	NHEK	skin
11	chr15:77314800-77330000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr15:77315000-77320800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr15:77315000-77322800	Weak transcription	HSMMtube	muscle
14	chr15:77315000-77323400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr15:77315400-77320600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr15:77315400-77322600	Weak transcription	HSMM	muscle
17	chr15:77315400-77323200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr15:77315400-77330400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr15:77315400-77330600	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr15:77316600-77323200	Weak transcription	Fetal Thymus	thymus
21	chr15:77316800-77322600	Weak transcription	A549	lung
22	chr15:77316800-77322800	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr15:77316800-77323400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr15:77316800-77323400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr15:77316800-77327000	Weak transcription	Brain Substantia Nigra	brain
26	chr15:77316800-77327600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr15:77316800-77327800	Weak transcription	GM12878-XiMat	blood
28	chr15:77316800-77330200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr15:77317200-77320800	Genic enhancers	Spleen	Spleen
30	chr15:77317400-77320600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr15:77317400-77326200	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr15:77317400-77329800	Strong transcription	Primary T cells from cord blood	blood
33	chr15:77317400-77330600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr15:77317600-77321400	Strong transcription	Primary B cells from peripheral blood	blood
35	chr15:77317600-77323400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr15:77317600-77330400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr15:77317800-77322400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr15:77318400-77320600	Enhancers	Fetal Muscle Leg	muscle
39	chr15:77318400-77350600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr15:77318600-77320800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
41	chr15:77319200-77321200	Enhancers	Fetal Brain Male	brain
42	chr15:77319200-77321200	Enhancers	Fetal Heart	heart
43	chr15:77319400-77322800	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr15:77319600-77320800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr15:77319600-77321200	Enhancers	Pancreas	Pancrea
46	chr15:77319600-77322400	Strong transcription	Thymus	Thymus
47	chr15:77319600-77322600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr15:77319600-77327200	Weak transcription	Brain Angular Gyrus	brain
49	chr15:77319800-77321200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr15:77320000-77321000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links