Variant report

Variant	rs3813353
Chromosome Location	chr6:132929592-132929593
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1081074	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28431469	0.93[ASN][1000 genomes]
rs61745666	0.87[ASN][1000 genomes]
rs7738600	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.94[ASN][1000 genomes]
rs7741930	0.91[ASN][1000 genomes]
rs7759004	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7763027	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7764168	1.00[CHB][hapmap];0.91[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap]
rs7769453	1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9483484	0.81[CHB][hapmap]
rs9483489	0.85[AMR][1000 genomes]
rs9493400	0.80[ASN][1000 genomes]
rs9493401	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9493402	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132920200-132929800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:132926200-132933600	Weak transcription	Stomach Mucosa	stomach
3	chr6:132926600-132931800	Weak transcription	Small Intestine	intestine
4	chr6:132928000-132935200	Enhancers	Fetal Intestine Small	intestine
5	chr6:132928200-132932200	Enhancers	Fetal Intestine Large	intestine
6	chr6:132928600-132930000	Enhancers	Liver	Liver
7	chr6:132928800-132929600	Weak transcription	Pancreas	Pancrea
8	chr6:132929000-132933600	Weak transcription	HepG2	liver
9	chr6:132929400-132929800	Flanking Active TSS	Duodenum Mucosa	Duodenum
10	chr6:132929400-132931600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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