Variant report

Variant	rs3813572
Chromosome Location	chr15:78832588-78832589
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF1	chr15:78832415-78833182	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr15:78832482-78833258	A549	lung:	n/a	n/a
3	YY1	chr15:78832583-78833218	NT2-D1	testis:	n/a	chr15:78833047-78833061 chr15:78832779-78832791 chr15:78833050-78833061
4	ATF3	chr15:78832542-78832950	K562	blood:	n/a	n/a
5	JUND	chr15:78832441-78833558	K562	blood:	n/a	chr15:78832738-78832747
6	SIN3AK20	chr15:78832466-78833259	SK-N-SH	brain:	n/a	n/a
7	CUX1	chr15:78832439-78832875	K562	blood:	n/a	n/a
8	POLR2A	chr15:78832389-78833221	U87	brain:	n/a	n/a
9	POLR2A	chr15:78832434-78833075	HepG2	liver:	n/a	n/a
10	TAF1	chr15:78832373-78833230	ECC-1	luminal epithelium:	n/a	n/a
11	E2F4	chr15:78832329-78833108	MCF10A-Er-Src	breast:	n/a	chr15:78832739-78832748 chr15:78832769-78832778 chr15:78833049-78833058
12	FOXP2	chr15:78832500-78833160	PFSK-1	brain:	n/a	n/a
13	TAF1	chr15:78832430-78833334	GM12878	blood:	n/a	n/a
14	POLR2A	chr15:78832370-78833100	K562	blood:	n/a	n/a
15	POLR2A	chr15:78832300-78833450	HUVEC	blood vessel:	n/a	n/a
16	POLR2A	chr15:78832388-78833212	HCT-116	colon:	n/a	n/a
17	REST	chr15:78832450-78833098	A549	lung:	n/a	chr15:78832656-78832666
18	TAL1	chr15:78832455-78832993	K562	blood:	n/a	chr15:78832610-78832619 chr15:78832874-78832883
19	POLR2A	chr15:78832021-78833457	PFSK-1	brain:	n/a	n/a
20	MAX	chr15:78832479-78833520	SK-N-SH	brain:	n/a	chr15:78833105-78833115 chr15:78833118-78833128
21	MXI1	chr15:78832315-78833620	GM12878	blood:	n/a	n/a
22	SIN3AK20	chr15:78832516-78833342	K562	blood:	n/a	n/a
23	POLR2A	chr15:78832284-78834051	K562	blood:	n/a	n/a
24	ELF1	chr15:78832134-78833114	MCF-7	breast:	n/a	chr15:78832717-78832728 chr15:78832718-78832727
25	MAX	chr15:78832267-78833432	NB4	blood:	n/a	chr15:78833105-78833115 chr15:78833118-78833128
26	ZNF263	chr15:78832328-78833042	HEK293-T-REx	kidney:	n/a	n/a
27	EP300	chr15:78832446-78833128	GM12878	blood:	n/a	chr15:78833095-78833104 chr15:78833047-78833063 chr15:78833052-78833061 chr15:78832502-78832516 chr15:78832672-78832688 chr15:78833054-78833070
28	RCOR1	chr15:78832460-78832785	K562	blood:	n/a	n/a
29	MXI1	chr15:78832459-78832993	K562	blood:	n/a	n/a
30	ZBTB7A	chr15:78832504-78833249	K562	blood:	n/a	n/a
31	POLR2A	chr15:78830840-78834174	GM12878	blood:	n/a	n/a
32	POLR2A	chr15:78832400-78833576	NB4	blood:	n/a	n/a
33	TAF1	chr15:78832537-78833371	H1-hESC	embryonic stem cell:	n/a	n/a
34	MYC	chr15:78832270-78833718	K562	blood:	n/a	chr15:78833105-78833115 chr15:78833118-78833128
35	TAF1	chr15:78832251-78833566	A549	lung:	n/a	n/a
36	TAF1	chr15:78832500-78833100	Hela-S3	cervix:	n/a	n/a
37	POLR2A	chr15:78832511-78833456	H1-hESC	embryonic stem cell:	n/a	n/a
38	POLR2A	chr15:78832174-78833462	GM12892	blood:	n/a	n/a
39	YY1	chr15:78832531-78833316	K562	blood:	n/a	chr15:78833047-78833061 chr15:78832779-78832791 chr15:78833050-78833061
40	POLR2A	chr15:78832398-78833473	H1-hESC	embryonic stem cell:	n/a	n/a
41	YY1	chr15:78832426-78833303	H1-hESC	embryonic stem cell:	n/a	chr15:78833047-78833061 chr15:78832779-78832791 chr15:78833050-78833061
42	SP4	chr15:78832571-78832920	H1-hESC	embryonic stem cell:	n/a	n/a
43	TBP	chr15:78832282-78833336	K562	blood:	n/a	n/a
44	RELA	chr15:78832407-78833377	GM19099	blood:	n/a	n/a
45	RELA	chr15:78832408-78833971	GM18951	blood:	n/a	n/a
46	EGR1	chr15:78832531-78832841	GM12878	blood:	n/a	chr15:78832769-78832778
47	PML	chr15:78832394-78833226	MCF-7	breast:	n/a	n/a
48	ZBTB7A	chr15:78832370-78833290	ECC-1	luminal epithelium:	n/a	n/a
49	MAFF	chr15:78832196-78832623	K562	blood:	n/a	chr15:78832314-78832332
50	EGR1	chr15:78832531-78833213	K562	blood:	n/a	chr15:78832769-78832778 chr15:78833008-78833022 chr15:78833102-78833115 chr15:78833102-78833115

No.	Distal block	Cell Line	Cell type
1	chr15:78831297..78836398-chr15:78856605..78860226,12	MCF-7	breast:
2	chr15:78832364..78832906-chr6:26199079..26199951,2	NB4	blood:
3	chr15:78832310..78833012-chr7:5569150..5569661,2	Hela-S3	cervix:
4	chr15:48938018..48938962-chr15:78832468..78832981,2	Hela-S3	cervix:
5	chr10:113943131..113944016-chr15:78832161..78833133,2	NB4	blood:
6	chr15:78797464..78804546-chr15:78829529..78835433,12	MCF-7	breast:
7	chr15:78832192..78833048-chr7:66205633..66206174,2	Hela-S3	cervix:
8	chr15:78798809..78800718-chr15:78830322..78833228,2	K562	blood:
9	chr15:78576883..78578539-chr15:78832474..78833981,2	MCF-7	breast:
10	chr15:78831312..78834277-chr15:78872379..78875019,2	MCF-7	breast:
11	chr15:78798844..78801827-chr15:78830907..78834394,5	MCF-7	breast:
12	chr15:78803621..78806940-chr15:78831151..78833237,3	K562	blood:
13	chr15:78832270..78832973-chr6:83902520..83903020,2	Hela-S3	cervix:
14	chr1:149858565..149859460-chr15:78832474..78833190,2	NB4	blood:
15	chr15:78832026..78832834-chr22:39928240..39929197,3	Hela-S3	cervix:
16	chr15:78832497..78833440-chr22:19419378..19420060,2	NB4	blood:
17	chr15:78831864..78834406-chr17:59476584..59478636,2	MCF-7	breast:
18	chr15:78798048..78801609-chr15:78828919..78833228,5	K562	blood:
19	chr13:50571059..50571582-chr15:78831795..78832694,2	Hela-S3	cervix:
20	chr1:144533622..144534312-chr15:78831795..78832702,2	Hela-S3	cervix:
21	chr15:78556899..78558870-chr15:78832501..78834304,2	MCF-7	breast:
22	chr15:78829726..78834442-chr15:78855710..78860360,8	K562	blood:
23	chr15:78832455..78833289-chr2:42275028..42275703,2	Hela-S3	cervix:
24	chr15:78832482..78833234-chr17:8113195..8113966,2	Hela-S3	cervix:

Variant related genes	Relation type
PSMA4	TF binding region
ENSG00000166147	Chromatin interaction
ENSG00000075624	Chromatin interaction
ENSG00000187051	Chromatin interaction
ENSG00000188266	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000197846	Chromatin interaction
ENSG00000154710	Chromatin interaction
ENSG00000178999	Chromatin interaction
ENSG00000121068	Chromatin interaction
ENSG00000243335	Chromatin interaction
ENSG00000140395	Chromatin interaction
ENSG00000267131	Chromatin interaction
ENSG00000204977	Chromatin interaction
ENSG00000259705	Chromatin interaction
ENSG00000162878	Chromatin interaction
ENSG00000185608	Chromatin interaction
ENSG00000267280	Chromatin interaction
ENSG00000196866	Chromatin interaction
ENSG00000140403	Chromatin interaction
ENSG00000119927	Chromatin interaction
ENSG00000197409	Chromatin interaction
ENSG00000013375	Chromatin interaction
ENSG00000169684	Chromatin interaction
ENSG00000201699	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 17 )

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs11630349	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11636131	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11858230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12591557	0.91[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12594391	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12900612	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12900783	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12902493	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12903129	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12906284	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12906846	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12906951	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12907169	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12907425	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12907966	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12910100	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12910289	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12910726	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12910969	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12910978	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12912022	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12912673	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12913173	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12914694	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12915366	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12915428	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12915652	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12916483	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12916999	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1504545	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1504546	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1504548	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17407257	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1847530	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1979905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1979906	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1979907	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1979908	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2292117	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28392948	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28438420	0.93[EUR][1000 genomes]
rs2869055	0.91[EUR][1000 genomes]
rs2869544	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3743077	0.83[TSI][hapmap]
rs3813571	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4275821	0.87[CEU][hapmap]
rs481134	0.84[CEU][hapmap];0.80[TSI][hapmap]
rs4886571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4886572	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4887062	0.96[CEU][hapmap];0.86[CHB][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4887063	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4887064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5022780	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs555018	0.83[CEU][hapmap]
rs55690619	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56007453	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs588765	0.86[CEU][hapmap]
rs601079	0.84[CEU][hapmap]
rs62008174	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62008193	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62008194	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs621849	0.84[CEU][hapmap];0.81[TSI][hapmap]
rs6495306	0.84[CEU][hapmap];0.81[TSI][hapmap]
rs680244	0.84[CEU][hapmap];0.80[TSI][hapmap]
rs7164030	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7173512	0.87[CEU][hapmap]
rs8025429	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8053	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs880395	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs905740	1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs952215	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs952216	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv1038816	chr15:78796434-78881087	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	48 gene(s)	inside rSNPs	diseases

mRNA abundance (count:17)

SNP	Gene	Cis/trans	Tissue	Source
rs3813572	CHRNA5	cis	Muscle Skeletal	GTEx
rs3813572	CHRNA5	cis	Heart Left Ventricle	GTEx
rs3813572	CHRNA5	cis	parietal	SCAN
rs3813572	CHRNA5	cis	Adipose Subcutaneous	GTEx
rs3813572	IREB2	cis	cerebellum	SCAN
rs3813572	PSMA4	cis	cerebellum	SCAN
rs3813572	CHRNA5	cis	Nerve Tibial	GTEx
rs3813572	CHRNA5	cis	lung	GTEx
rs3813572	RP11-650L12.2	cis	Muscle Skeletal	GTEx
rs3813572	IREB2	cis	parietal	SCAN
rs3813572	CHRNA3	cis	Muscle Skeletal	GTEx
rs3813572	RP11-650L12.2	cis	Adipose Subcutaneous	GTEx
rs3813572	RP11-650L12.2	cis	Heart Left Ventricle	GTEx
rs3813572	RP11-650L12.2	cis	lung	GTEx
rs3813572	RP11-650L12.2	cis	Nerve Tibial	GTEx
rs3813572	CHRNA5	cis	cerebellum	SCAN
rs3813572	CHRNA5	cis	Esophagus Mucosa	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78832000-78832600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr15:78832000-78833400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr15:78832000-78833800	Active TSS	Colon Smooth Muscle	Colon
4	chr15:78832000-78834200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr15:78832000-78834200	Active TSS	Duodenum Mucosa	Duodenum
6	chr15:78832000-78834600	Active TSS	Colonic Mucosa	Colon
7	chr15:78832200-78832600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr15:78832200-78832600	Flanking Active TSS	Primary B cells from cord blood	blood
9	chr15:78832200-78832600	Flanking Active TSS	Primary B cells from peripheral blood	blood
10	chr15:78832200-78832600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
11	chr15:78832200-78832600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
12	chr15:78832200-78832600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
13	chr15:78832200-78832600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr15:78832200-78832600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr15:78832200-78832600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr15:78832200-78832600	Flanking Active TSS	Adipose Nuclei	Adipose
17	chr15:78832200-78832600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
18	chr15:78832200-78832600	Flanking Active TSS	Dnd41	blood
19	chr15:78832200-78832600	Flanking Active TSS	NH-A	brain
20	chr15:78832200-78832600	Flanking Active TSS	NHEK	skin
21	chr15:78832200-78832600	Flanking Active TSS	Osteobl	bone
22	chr15:78832200-78832800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr15:78832200-78833200	Active TSS	Primary hematopoietic stem cells short term culture	blood
24	chr15:78832200-78833400	Active TSS	Primary T cells from cord blood	blood
25	chr15:78832200-78833400	Active TSS	Primary hematopoietic stem cells	blood
26	chr15:78832200-78833400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
27	chr15:78832200-78833400	Active TSS	Cortex derived primary cultured neurospheres	brain
28	chr15:78832200-78833400	Active TSS	Brain Cingulate Gyrus	brain
29	chr15:78832200-78833400	Active TSS	Brain Germinal Matrix	brain
30	chr15:78832200-78833400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr15:78832200-78833400	Active TSS	Fetal Lung	lung
32	chr15:78832200-78833400	Active TSS	Stomach Smooth Muscle	stomach
33	chr15:78832200-78833400	Active TSS	Monocytes-CD14+_RO01746	blood
34	chr15:78832200-78833600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:78832200-78833600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
36	chr15:78832200-78833600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr15:78832200-78833600	Active TSS	Brain Angular Gyrus	brain
38	chr15:78832200-78833600	Active TSS	Brain Inferior Temporal Lobe	brain
39	chr15:78832200-78833600	Active TSS	Brain Substantia Nigra	brain
40	chr15:78832200-78833600	Active TSS	Duodenum Smooth Muscle	Duodenum
41	chr15:78832200-78833600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
42	chr15:78832200-78833600	Active TSS	Fetal Brain Female	brain
43	chr15:78832200-78833600	Active TSS	Fetal Stomach	stomach
44	chr15:78832200-78833600	Active TSS	Spleen	Spleen
45	chr15:78832200-78833600	Active TSS	HUVEC	blood vessel
46	chr15:78832200-78833800	Active TSS	HUES64 Cell Line	embryonic stem cell
47	chr15:78832200-78833800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr15:78832200-78833800	Active TSS	Breast Myoepithelial Primary Cells	Breast
49	chr15:78832200-78833800	Active TSS	Muscle Satellite Cultured Cells	--
50	chr15:78832200-78833800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links