Variant report

Variant	rs3815553
Chromosome Location	chr7:104535572-104535573
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10247369	0.93[EUR][1000 genomes]
rs1075229	0.90[ASN][1000 genomes]
rs10808135	0.87[EUR][1000 genomes]
rs11561931	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[ASN][1000 genomes]
rs12665943	0.90[ASN][1000 genomes]
rs12667927	0.91[EUR][1000 genomes]
rs13232695	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs17706864	0.91[CHB][hapmap];0.84[YRI][hapmap];0.92[ASN][1000 genomes]
rs2041830	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2214083	0.80[EUR][1000 genomes]
rs2891785	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs34477839	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35514223	0.90[ASN][1000 genomes]
rs62485455	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs735443	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs7458894	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv981792	chr7:104524351-104538104	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104524800-104540800	Weak transcription	Brain Anterior Caudate	brain
2	chr7:104525400-104540400	Weak transcription	Brain Substantia Nigra	brain
3	chr7:104527800-104539600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr7:104531400-104541800	Weak transcription	Pancreas	Pancrea
5	chr7:104531400-104542000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:104534400-104537000	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr7:104534400-104537200	Genic enhancers	Fetal Intestine Small	intestine
8	chr7:104534600-104538200	Enhancers	Duodenum Mucosa	Duodenum
9	chr7:104534600-104538400	Flanking Active TSS	GM12878-XiMat	blood
10	chr7:104535000-104536600	Enhancers	Fetal Intestine Large	intestine
11	chr7:104535000-104539800	Weak transcription	Brain Hippocampus Middle	brain
12	chr7:104535000-104557000	Weak transcription	Fetal Kidney	kidney
13	chr7:104535400-104536000	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr7:104535400-104537800	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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