Variant report

Variant	rs3816614
Chromosome Location	chr11:46890165-46890166
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 114 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs1007738	0.94[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.96[MEX][hapmap];0.97[MKK][hapmap];0.96[TSI][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10734548	0.94[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10734549	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10742784	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10769205	0.89[GIH][hapmap]
rs10769208	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10769211	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10769212	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769226	0.83[GIH][hapmap];0.93[TSI][hapmap]
rs10838612	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs10838620	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10838624	0.99[ASN][1000 genomes]
rs10838627	0.92[ASN][1000 genomes]
rs10838628	0.92[ASN][1000 genomes]
rs10838629	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10838635	0.83[GIH][hapmap];0.93[TSI][hapmap];0.80[EUR][1000 genomes]
rs10838644	0.83[GIH][hapmap];0.93[TSI][hapmap]
rs10838652	0.83[GIH][hapmap];0.93[TSI][hapmap]
rs11038977	0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs11038994	0.91[ASN][1000 genomes]
rs11038999	0.92[ASN][1000 genomes]
rs11039002	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11039014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039017	0.92[ASN][1000 genomes]
rs11039018	0.85[ASN][1000 genomes]
rs11039024	0.82[ASN][1000 genomes]
rs11039028	0.81[EUR][1000 genomes]
rs11039033	0.80[EUR][1000 genomes]
rs11600292	0.82[GIH][hapmap];0.92[TSI][hapmap];0.81[EUR][1000 genomes]
rs11602036	0.85[ASN][1000 genomes]
rs11602250	0.81[EUR][1000 genomes]
rs11608083	0.81[EUR][1000 genomes]
rs12361673	0.89[GIH][hapmap]
rs12575609	0.88[ASN][1000 genomes]
rs12806577	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12807111	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13448	0.86[GIH][hapmap]
rs1551744	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1809293	0.96[ASN][1000 genomes]
rs2035068	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2070850	0.86[CHB][hapmap]
rs2070852	0.89[GIH][hapmap];0.92[MEX][hapmap]
rs2290883	0.99[ASN][1000 genomes]
rs2290884	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2306026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2306027	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2306028	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2306033	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2306035	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2306036	0.81[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.86[ASN][1000 genomes]
rs2306037	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2903522	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3136441	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs3136447	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs3136457	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs3136460	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs34340483	0.81[EUR][1000 genomes]
rs3829940	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4075619	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4076557	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs4294527	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4394802	0.83[GIH][hapmap];0.81[JPT][hapmap];0.93[TSI][hapmap]
rs4453193	0.85[ASN][1000 genomes]
rs4453194	0.83[ASN][1000 genomes]
rs4469848	0.91[ASN][1000 genomes]
rs4534535	0.85[ASN][1000 genomes]
rs4581406	0.83[GIH][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs4606447	0.87[GIH][hapmap]
rs4752815	0.83[GIH][hapmap];0.93[TSI][hapmap]
rs4752816	0.83[GIH][hapmap];0.93[TSI][hapmap]
rs4752927	0.90[JPT][hapmap]
rs4752932	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4752933	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4752936	0.91[ASN][1000 genomes]
rs4752940	0.95[ASN][1000 genomes]
rs4752941	0.92[ASN][1000 genomes]
rs4752946	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.99[ASN][1000 genomes]
rs4752947	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs5896	0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs60258676	0.99[ASN][1000 genomes]
rs6485692	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6485695	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6485696	0.94[GIH][hapmap];0.80[MEX][hapmap]
rs6485702	0.91[GIH][hapmap];0.80[MEX][hapmap]
rs6485715	0.83[GIH][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs6485726	0.83[GIH][hapmap];0.93[TSI][hapmap]
rs7101374	0.84[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.96[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7107778	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7109707	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7118170	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7119247	0.91[ASN][1000 genomes]
rs7124648	0.83[GIH][hapmap];0.93[TSI][hapmap]
rs7126005	0.83[GIH][hapmap];0.93[TSI][hapmap]
rs7128650	0.83[GIH][hapmap];0.93[TSI][hapmap]
rs7130947	0.83[GIH][hapmap];0.93[TSI][hapmap]
rs7480140	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7480260	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7929294	0.89[ASW][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7934421	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7935346	0.85[GIH][hapmap];0.92[TSI][hapmap]
rs7938169	0.83[GIH][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs7939786	0.80[EUR][1000 genomes]
rs7940441	0.92[GIH][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];0.96[TSI][hapmap];0.87[EUR][1000 genomes]
rs7940578	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7940682	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7941252	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7941894	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7941964	0.87[ASN][1000 genomes]
rs7943866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945558	0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs7946739	0.81[EUR][1000 genomes]
rs7950753	0.83[GIH][hapmap];0.93[TSI][hapmap]
rs898604	0.86[ASN][1000 genomes]
rs964551	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3816614	ACP2	cis	lymphoblastoid	seeQTL

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46868000-46909000	Weak transcription	Small Intestine	intestine
2	chr11:46868600-46894400	Weak transcription	HMEC	breast
3	chr11:46868600-46895200	Weak transcription	Fetal Heart	heart
4	chr11:46868600-46917400	Weak transcription	Fetal Brain Male	brain
5	chr11:46868800-46913000	Weak transcription	A549	lung
6	chr11:46875600-46917200	Strong transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:46876000-46905200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:46876200-46894600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:46876600-46911400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:46876600-46916600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr11:46877400-46909200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:46877400-46909200	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr11:46877400-46912000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:46877400-46912600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr11:46877600-46919000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:46877800-46891200	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr11:46877800-46912200	Strong transcription	Fetal Stomach	stomach
18	chr11:46877800-46912400	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr11:46878000-46908200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:46878400-46909600	Strong transcription	Fetal Muscle Leg	muscle
21	chr11:46878400-46922000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr11:46879000-46909000	Strong transcription	Duodenum Mucosa	Duodenum
23	chr11:46879200-46901200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr11:46879800-46918200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr11:46880000-46901000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr11:46880800-46892600	Weak transcription	Lung	lung
27	chr11:46880800-46896800	Weak transcription	Adipose Nuclei	Adipose
28	chr11:46880800-46910800	Strong transcription	Fetal Muscle Trunk	muscle
29	chr11:46881000-46890200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:46882000-46897600	Weak transcription	Stomach Mucosa	stomach
31	chr11:46882400-46894400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr11:46882400-46894600	Weak transcription	Colon Smooth Muscle	Colon
33	chr11:46882600-46892600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr11:46883600-46891400	Strong transcription	Fetal Lung	lung
35	chr11:46883800-46899200	Strong transcription	H1 Cell Line	embryonic stem cell
36	chr11:46883800-46904200	Strong transcription	Stomach Smooth Muscle	stomach
37	chr11:46884200-46891600	Strong transcription	Brain Cingulate Gyrus	brain
38	chr11:46884800-46894600	Weak transcription	Gastric	stomach
39	chr11:46885000-46893600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr11:46885000-46894600	Weak transcription	Liver	Liver
41	chr11:46886000-46896400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr11:46886000-46921800	Weak transcription	Hela-S3	cervix
43	chr11:46886200-46907000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr11:46886800-46894800	Weak transcription	NHEK	skin
45	chr11:46886800-46895000	Weak transcription	Esophagus	oesophagus
46	chr11:46886800-46897000	Weak transcription	Fetal Kidney	kidney
47	chr11:46887000-46892600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr11:46887400-46893600	Strong transcription	HSMMtube	muscle
49	chr11:46887400-46895000	Weak transcription	NH-A	brain
50	chr11:46887600-46894800	Weak transcription	NHLF	lung

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