Variant report

Variant	rs3818275
Chromosome Location	chr11:35308783-35308784
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10768124	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11033052	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1321677	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1570214	0.85[YRI][hapmap]
rs2236273	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2273689	0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2421765	0.96[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2421766	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2421823	0.81[EUR][1000 genomes]
rs3763888	0.85[YRI][hapmap]
rs3794096	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3794099	0.85[YRI][hapmap]
rs3847605	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3847606	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3847607	0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3847608	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3847609	0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3888947	0.82[JPT][hapmap]
rs3903687	0.84[CHB][hapmap];0.91[CHD][hapmap];0.85[GIH][hapmap];0.84[JPT][hapmap];0.90[MEX][hapmap];0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4756203	0.85[YRI][hapmap]
rs4756208	0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7105505	0.85[YRI][hapmap]
rs7105690	0.85[YRI][hapmap]
rs7115246	0.89[YRI][hapmap]
rs7121587	0.88[YRI][hapmap]
rs7130385	0.82[EUR][1000 genomes]
rs7929900	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7936564	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35285800-35308800	Weak transcription	Gastric	stomach
2	chr11:35298000-35317200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:35298200-35326000	Weak transcription	Brain Substantia Nigra	brain
4	chr11:35299000-35308800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:35299000-35326600	Weak transcription	Brain Hippocampus Middle	brain
6	chr11:35299600-35309800	Strong transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:35299800-35328600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:35300400-35309800	Strong transcription	Fetal Brain Female	brain
9	chr11:35302400-35327000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:35302600-35309800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr11:35302600-35329000	Weak transcription	Brain Angular Gyrus	brain
12	chr11:35304000-35324800	Weak transcription	Liver	Liver
13	chr11:35304200-35309600	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr11:35304200-35309800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:35304200-35310600	Weak transcription	Left Ventricle	heart
16	chr11:35304600-35309600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr11:35304600-35309600	Weak transcription	HSMM	muscle
18	chr11:35304600-35309800	Weak transcription	Osteobl	bone
19	chr11:35304600-35310000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr11:35304600-35314200	Weak transcription	Stomach Mucosa	stomach
21	chr11:35304600-35317000	Weak transcription	Pancreas	Pancrea
22	chr11:35304600-35326600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:35304800-35309000	Weak transcription	NHDF-Ad	bronchial
24	chr11:35304800-35309800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:35304800-35309800	Weak transcription	NHLF	lung
26	chr11:35304800-35310000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:35304800-35310000	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr11:35304800-35310200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:35305200-35309800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:35307000-35309400	Weak transcription	HSMMtube	muscle
31	chr11:35307000-35309800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:35307000-35310000	Strong transcription	Brain Germinal Matrix	brain
33	chr11:35308000-35324000	Weak transcription	HepG2	liver
34	chr11:35308200-35311800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:35308200-35312000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr11:35308400-35313600	Weak transcription	Fetal Brain Male	brain
37	chr11:35308600-35310400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr11:35308600-35325800	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr11:35308600-35326400	Weak transcription	Brain Anterior Caudate	brain

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