The 2.0 version of rSNPBase

Variant report

Variant rs3820909
Chromosome Location chr2:33614663-33614664
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:33588400-33624400 Weak transcription Gastric stomach
2 chr2:33589200-33623000 Weak transcription Duodenum Smooth Muscle Duodenum
3 chr2:33590600-33615800 Weak transcription Fetal Muscle Trunk muscle
4 chr2:33590600-33624800 Weak transcription Fetal Adrenal Gland Adrenal Gland
5 chr2:33591400-33616000 Weak transcription Colon Smooth Muscle Colon
6 chr2:33592000-33624800 Weak transcription Skeletal Muscle Male skeletal muscle
7 chr2:33597200-33622200 Weak transcription Fetal Muscle Leg muscle
8 chr2:33604200-33616600 Weak transcription Muscle Satellite Cultured Cells --
9 chr2:33604200-33624800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr2:33604600-33623600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
11 chr2:33604800-33616200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
12 chr2:33604800-33616800 Weak transcription Brain Anterior Caudate brain
13 chr2:33605400-33616000 Weak transcription Brain Hippocampus Middle brain
14 chr2:33607600-33616600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
15 chr2:33609800-33615000 Weak transcription NHDF-Ad bronchial
16 chr2:33609800-33630200 Weak transcription Fetal Heart heart
17 chr2:33610000-33622200 Weak transcription Left Ventricle heart
18 chr2:33610200-33615000 Weak transcription Psoas Muscle Psoas
19 chr2:33610400-33616200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
20 chr2:33611200-33615600 Strong transcription Osteobl bone
21 chr2:33611400-33616200 Weak transcription Fetal Lung lung
22 chr2:33612400-33615000 Genic enhancers Fetal Stomach stomach
23 chr2:33612800-33621000 Weak transcription iPS-15b Cell Line embryonic stem cell
24 chr2:33613000-33623000 Weak transcription Right Ventricle heart
25 chr2:33613400-33615000 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
26 chr2:33613400-33621800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
27 chr2:33613400-33625000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
28 chr2:33613400-33630600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr2:33613600-33615600 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
30 chr2:33613600-33622200 Weak transcription Ovary ovary
31 chr2:33613600-33623000 Weak transcription NH-A brain
32 chr2:33613800-33615400 Strong transcription Liver Liver
33 chr2:33614000-33615200 Weak transcription Stomach Smooth Muscle stomach
34 chr2:33614000-33615400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
35 chr2:33614000-33616400 Strong transcription Cortex derived primary cultured neurospheres brain
36 chr2:33614200-33615200 Weak transcription HUES64 Cell Line embryonic stem cell
37 chr2:33614200-33615400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr2:33614200-33616800 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
39 chr2:33614400-33615400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr2:33614400-33616200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
41 chr2:33614400-33623200 Weak transcription NHLF lung
42 chr2:33614600-33628600 Weak transcription Aorta Aorta

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Last update: Aug 31, 2015