Variant report

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10954144	0.90[GIH][hapmap];0.87[TSI][hapmap]
rs11563506	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11563693	0.82[JPT][hapmap]
rs11563719	0.90[GIH][hapmap]
rs11760208	0.90[GIH][hapmap]
rs11971948	0.82[JPT][hapmap]
rs11974109	0.82[JPT][hapmap]
rs11980964	0.82[JPT][hapmap]
rs12375090	0.90[GIH][hapmap];0.87[TSI][hapmap]
rs1419427	1.00[JPT][hapmap]
rs1419450	1.00[ASW][hapmap]
rs17150358	1.00[ASW][hapmap]
rs17862315	0.82[JPT][hapmap]
rs17863227	0.82[JPT][hapmap]
rs17863239	0.82[JPT][hapmap]
rs17864101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17864149	0.82[JPT][hapmap]
rs17867782	0.82[JPT][hapmap]
rs2237775	1.00[ASW][hapmap]
rs2237780	0.91[CEU][hapmap];0.97[GIH][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap]
rs2237784	0.93[GIH][hapmap];0.90[TSI][hapmap]
rs2237786	0.93[GIH][hapmap];0.90[TSI][hapmap]
rs2237790	0.90[GIH][hapmap];0.84[TSI][hapmap]
rs2237791	0.90[GIH][hapmap]
rs2237794	0.82[JPT][hapmap];0.81[MEX][hapmap]
rs2283097	0.82[JPT][hapmap];0.81[MEX][hapmap]
rs2299535	0.90[GIH][hapmap]
rs2299537	0.87[GIH][hapmap]
rs2299538	0.90[GIH][hapmap]
rs2299541	0.90[GIH][hapmap]
rs2299545	0.82[JPT][hapmap]
rs2299548	0.82[JPT][hapmap]
rs2299550	0.82[JPT][hapmap]
rs3808118	0.82[JPT][hapmap];0.81[MEX][hapmap]
rs3808143	1.00[ASW][hapmap]
rs6956914	0.82[JPT][hapmap]
rs6975409	0.82[JPT][hapmap];0.81[MEX][hapmap]
rs6979572	0.87[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758132	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759562	chr7:126494789-126677843	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv427805	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv608379	chr7:126643692-126657545	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3824009	IMPDH1	cis	cerebellum	SCAN
rs3824009	SND1	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be: