Variant report

Variant	rs3824014
Chromosome Location	chr7:126284171-126284172
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126210096..126212275-chr7:126283884..126286217,2	K562	blood:

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10234189	0.94[YRI][hapmap]
rs10255379	0.96[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10487454	0.94[YRI][hapmap]
rs10487455	0.94[YRI][hapmap]
rs10487456	0.94[YRI][hapmap]
rs10808224	0.94[YRI][hapmap]
rs10954120	0.94[YRI][hapmap]
rs10954131	0.94[YRI][hapmap]
rs11971474	0.94[YRI][hapmap]
rs12532564	0.94[YRI][hapmap]
rs12533174	0.87[YRI][hapmap]
rs12533463	1.00[YRI][hapmap]
rs12533543	0.94[YRI][hapmap]
rs12536122	0.94[YRI][hapmap]
rs12537689	0.88[YRI][hapmap]
rs12538680	0.94[YRI][hapmap]
rs12538710	0.87[YRI][hapmap]
rs12538744	0.87[YRI][hapmap]
rs12538796	0.87[YRI][hapmap]
rs12540159	0.88[YRI][hapmap]
rs12674181	0.93[YRI][hapmap]
rs12706740	0.88[CHB][hapmap];0.85[CHD][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs1361986	0.88[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap]
rs1361989	0.94[YRI][hapmap]
rs1361990	0.94[YRI][hapmap]
rs1419476	0.94[YRI][hapmap]
rs1419479	0.88[YRI][hapmap]
rs1419480	0.88[YRI][hapmap]
rs1419481	0.88[YRI][hapmap]
rs1419484	0.94[YRI][hapmap]
rs1419485	0.81[JPT][hapmap];0.93[YRI][hapmap]
rs1419486	0.88[YRI][hapmap]
rs1419487	0.88[YRI][hapmap]
rs1419488	0.88[YRI][hapmap]
rs1419489	0.88[YRI][hapmap]
rs1419494	0.93[YRI][hapmap]
rs1419498	0.94[YRI][hapmap]
rs1419499	0.87[YRI][hapmap]
rs1468156	0.94[YRI][hapmap]
rs1579215	0.93[YRI][hapmap]
rs17610345	0.94[YRI][hapmap]
rs17610889	0.88[YRI][hapmap]
rs17612358	0.94[YRI][hapmap]
rs17683130	0.94[YRI][hapmap]
rs17683331	0.94[YRI][hapmap]
rs17683777	0.93[YRI][hapmap]
rs17684332	0.88[YRI][hapmap]
rs17690706	0.94[YRI][hapmap]
rs1815971	0.94[YRI][hapmap]
rs1894733	0.94[YRI][hapmap]
rs2027988	0.94[YRI][hapmap]
rs2027989	0.94[YRI][hapmap]
rs2073862	0.88[YRI][hapmap]
rs2106309	0.88[YRI][hapmap]
rs2106310	0.86[YRI][hapmap]
rs2106311	0.94[YRI][hapmap]
rs2106312	0.94[YRI][hapmap]
rs2106313	0.94[YRI][hapmap]
rs2106314	0.94[YRI][hapmap]
rs2237743	0.93[YRI][hapmap]
rs2237745	0.94[YRI][hapmap]
rs2237747	0.93[YRI][hapmap]
rs2237750	0.94[YRI][hapmap]
rs2237751	0.94[YRI][hapmap]
rs2237752	0.94[YRI][hapmap]
rs2237761	0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs2237762	0.92[YRI][hapmap]
rs2299466	0.94[YRI][hapmap]
rs2299467	0.94[YRI][hapmap]
rs2299468	0.94[YRI][hapmap]
rs2299469	0.93[YRI][hapmap]
rs2299470	0.94[YRI][hapmap]
rs2299475	0.94[YRI][hapmap]
rs2299476	0.94[YRI][hapmap]
rs2299477	0.88[YRI][hapmap]
rs2299478	0.87[YRI][hapmap]
rs2299479	0.88[YRI][hapmap]
rs2299480	0.93[YRI][hapmap]
rs2299484	0.93[YRI][hapmap]
rs2299486	0.82[YRI][hapmap]
rs2299487	0.94[YRI][hapmap]
rs2299488	0.94[YRI][hapmap]
rs2299491	0.94[YRI][hapmap]
rs2299493	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs2402820	0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs2896372	0.94[YRI][hapmap]
rs2896373	0.86[YRI][hapmap]
rs3802001	0.93[YRI][hapmap]
rs3808156	0.94[YRI][hapmap]
rs3808157	0.94[YRI][hapmap]
rs3808161	0.88[YRI][hapmap]
rs3824018	0.94[YRI][hapmap]
rs4141361	0.93[YRI][hapmap]
rs4236623	0.88[YRI][hapmap]
rs4236624	0.87[YRI][hapmap]
rs4380862	0.94[YRI][hapmap]
rs4731320	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs6467092	0.88[YRI][hapmap]
rs6954055	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs6964806	0.94[YRI][hapmap]
rs6974396	0.82[YRI][hapmap]
rs6975231	0.88[CHB][hapmap];0.95[JPT][hapmap]
rs728600	0.94[YRI][hapmap]
rs728601	0.94[YRI][hapmap]
rs728602	0.94[YRI][hapmap]
rs737702	0.88[YRI][hapmap]
rs7455156	0.81[YRI][hapmap]
rs7779831	0.94[YRI][hapmap]
rs7790017	0.88[YRI][hapmap]
rs7792592	0.94[YRI][hapmap]
rs7792700	0.94[YRI][hapmap]
rs7792723	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7803165	0.90[JPT][hapmap]
rs7804379	0.82[JPT][hapmap]
rs7808017	0.96[CEU][hapmap];0.88[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8180790	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9641799	0.94[YRI][hapmap]
rs9641800	0.94[YRI][hapmap]
rs9691497	0.87[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs975266	0.88[YRI][hapmap]
rs9942596	0.94[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032108	chr7:126278349-126362592	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv5939	chr7:126279355-126322778	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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