Variant report

Variant	rs3824889
Chromosome Location	chr11:76701365-76701366
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76699145..76701750-chr11:76703493..76705984,2	K562	blood:
2	chr11:76693879..76696563-chr11:76699673..76701721,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000078124	Chromatin interaction

Extended variants
information (count: 215 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:210)

rs_ID	r²[population]
rs10082568	0.83[EUR][1000 genomes]
rs10431154	0.83[EUR][1000 genomes]
rs10431181	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs10431182	0.83[EUR][1000 genomes]
rs10736811	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10736812	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10751263	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10751264	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs10751267	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10751268	0.94[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs10751270	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10751271	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793211	0.83[EUR][1000 genomes]
rs10793212	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs10793213	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs10793214	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10793215	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10793216	0.82[EUR][1000 genomes]
rs10793217	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs10793218	0.80[EUR][1000 genomes]
rs10793219	0.83[EUR][1000 genomes]
rs10793220	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.94[TSI][hapmap];0.84[EUR][1000 genomes]
rs10793221	0.84[EUR][1000 genomes]
rs10793223	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.93[JPT][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793224	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793225	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793226	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793227	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793228	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793231	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899298	0.82[AFR][1000 genomes]
rs10899303	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10899307	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes]
rs10899310	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.91[TSI][hapmap]
rs10899311	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs10899312	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs10899313	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs10899315	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap]
rs10899327	0.83[EUR][1000 genomes]
rs10899328	1.00[CEU][hapmap];0.83[CHB][hapmap];0.83[EUR][1000 genomes]
rs10899329	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[EUR][1000 genomes]
rs10899330	0.83[EUR][1000 genomes]
rs10899332	0.83[EUR][1000 genomes]
rs10899333	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899341	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899343	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899344	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11237025	0.83[EUR][1000 genomes]
rs11237027	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs11237029	0.81[EUR][1000 genomes]
rs11237031	0.84[EUR][1000 genomes]
rs11237035	0.83[EUR][1000 genomes]
rs11237036	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11237052	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12222825	0.83[EUR][1000 genomes]
rs12223659	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1225139	0.85[GIH][hapmap]
rs12279946	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12286501	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12286600	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12292156	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap]
rs12718490	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.91[TSI][hapmap]
rs12794575	0.94[CEU][hapmap]
rs12796913	1.00[CEU][hapmap];0.84[CHB][hapmap];0.80[CHD][hapmap];0.91[TSI][hapmap]
rs12807735	0.84[EUR][1000 genomes]
rs1356455	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.94[TSI][hapmap];0.80[EUR][1000 genomes]
rs1356456	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1372045	0.88[CEU][hapmap]
rs1372046	0.94[CEU][hapmap]
rs1474087	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.94[TSI][hapmap]
rs1517905	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs1517906	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes]
rs1517907	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1517908	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1517909	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1517910	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1589126	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1607285	0.89[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs1607287	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1660579	0.84[GIH][hapmap]
rs17135319	0.83[YRI][hapmap]
rs1816748	0.84[AFR][1000 genomes]
rs1850544	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1878630	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1914599	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs1914600	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs1945083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1945086	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1969315	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1973714	0.95[ASN][1000 genomes]
rs1980204	1.00[CEU][hapmap]
rs1980205	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap]
rs2090524	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2119456	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs2119457	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.94[TSI][hapmap]
rs2119458	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2156770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2203755	1.00[CEU][hapmap]
rs2372388	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs2826	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3740764	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3740765	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3740767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3781697	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3851191	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3914687	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4145048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4379869	0.94[ASW][hapmap];1.00[CEU][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap];0.84[LWK][hapmap];0.80[MEX][hapmap];0.91[TSI][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs4457775	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs4460836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4471450	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap]
rs4488228	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap];0.94[TSI][hapmap]
rs4488229	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs4944128	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4944129	0.81[EUR][1000 genomes]
rs4944131	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4944132	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4944134	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4945115	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs4945116	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs4945124	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs4945125	0.83[EUR][1000 genomes]
rs4945127	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4945129	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945131	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945132	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945133	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs591043	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6592671	0.88[CEU][hapmap]
rs6592676	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs6592678	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6592679	0.84[AFR][1000 genomes]
rs6592680	0.94[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.84[LWK][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes]
rs6592682	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs6592683	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6592684	1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6592687	1.00[CEU][hapmap];0.83[CHB][hapmap];0.83[EUR][1000 genomes]
rs6592689	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592690	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592692	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6592693	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592694	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7101593	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs7103308	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs7103500	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7105694	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7105895	0.81[AFR][1000 genomes]
rs7106625	1.00[CEU][hapmap];0.84[CHB][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap]
rs7107505	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110305	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7110532	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7110849	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7113282	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap]
rs7113290	0.94[CEU][hapmap];0.88[TSI][hapmap]
rs7113647	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7113778	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7114827	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs7116513	0.82[AFR][1000 genomes]
rs7116800	1.00[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap]
rs7117545	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.94[TSI][hapmap]
rs7117682	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.94[TSI][hapmap]
rs7118762	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.94[TSI][hapmap]
rs7119361	1.00[CEU][hapmap];0.80[CHD][hapmap];0.94[TSI][hapmap]
rs7119492	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120215	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs7121273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121920	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7122736	0.84[EUR][1000 genomes]
rs7123496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7123694	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[AFR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7123723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7127936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7128038	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7128770	0.81[EUR][1000 genomes]
rs7129147	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7129388	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924613	0.93[CEU][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7924888	0.81[AFR][1000 genomes]
rs7925135	0.94[CEU][hapmap];0.89[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.93[JPT][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7925652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7925774	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7926122	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7926409	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7927367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927658	0.94[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.84[LWK][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs7927731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929837	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7931561	0.94[CEU][hapmap];0.88[TSI][hapmap]
rs7931646	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931894	0.91[ASN][1000 genomes]
rs7932288	0.94[ASW][hapmap];0.94[CEU][hapmap];0.81[LWK][hapmap];0.80[MEX][hapmap];0.88[TSI][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes]
rs7933351	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs7937883	1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[TSI][hapmap]
rs7940782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7940972	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7942574	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap];0.86[LWK][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7943913	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7950001	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7951501	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs9326485	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs938810	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.94[TSI][hapmap]
rs949339	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.96[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs949340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs963704	1.00[CEU][hapmap];0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519700	chr11:76637651-76709407	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1042924	chr11:76659477-76709407	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1040833	chr11:76667160-76709407	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv396	chr11:76670116-76702745	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1802222	chr11:76683305-76709407	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs3824889	SNORD15A	cis	cerebellum	SCAN
rs3824889	ACER3	cis	parietal	SCAN
rs3824889	ACER3	cis	lymphoblastoid	seeQTL
rs3824889	CAPN5	cis	parietal	SCAN
rs3824889	LIPT2	cis	parietal	SCAN
rs3824889	ACER3	cis	cerebellum	SCAN

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76660000-76710800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr11:76675000-76721800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:76675000-76725600	Weak transcription	A549	lung
4	chr11:76675000-76729600	Weak transcription	Brain Angular Gyrus	brain
5	chr11:76683000-76736400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:76683200-76729200	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:76683600-76720400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:76683600-76728000	Weak transcription	Brain Anterior Caudate	brain
9	chr11:76688600-76710800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:76689200-76734600	Weak transcription	Liver	Liver
11	chr11:76689600-76717800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:76689600-76737000	Weak transcription	Pancreas	Pancrea
13	chr11:76689800-76704800	Weak transcription	Primary B cells from peripheral blood	blood
14	chr11:76689800-76708400	Weak transcription	Primary T cells from cord blood	blood
15	chr11:76689800-76731400	Weak transcription	Ovary	ovary
16	chr11:76690000-76706000	Weak transcription	Gastric	stomach
17	chr11:76690000-76709200	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr11:76690000-76718000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:76690000-76718600	Weak transcription	Primary B cells from cord blood	blood
20	chr11:76690000-76722000	Weak transcription	Aorta	Aorta
21	chr11:76690000-76723800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr11:76690000-76735800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr11:76690200-76704000	Weak transcription	Lung	lung
24	chr11:76690200-76704800	Weak transcription	Fetal Stomach	stomach
25	chr11:76690200-76709200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr11:76690200-76710000	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr11:76690200-76710600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:76690200-76722000	Weak transcription	Spleen	Spleen
29	chr11:76690200-76729000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:76690200-76736800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr11:76690400-76717200	Weak transcription	Primary hematopoietic stem cells	blood
32	chr11:76690400-76734600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr11:76692600-76713000	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr11:76693800-76734800	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr11:76694000-76738600	Weak transcription	HSMMtube	muscle
36	chr11:76696000-76702200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr11:76696000-76711200	Strong transcription	Adipose Nuclei	Adipose
38	chr11:76696200-76708400	Weak transcription	HMEC	breast
39	chr11:76696200-76738000	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr11:76696400-76701800	Weak transcription	Duodenum Mucosa	Duodenum
41	chr11:76696400-76702000	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr11:76696400-76706200	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr11:76696400-76714800	Weak transcription	NHEK	skin
44	chr11:76696400-76726600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr11:76696600-76722200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr11:76696600-76725600	Weak transcription	Small Intestine	intestine
47	chr11:76696600-76726800	Weak transcription	Esophagus	oesophagus
48	chr11:76697000-76726600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr11:76697200-76707400	Enhancers	Fetal Intestine Large	intestine
50	chr11:76698000-76726600	Weak transcription	NHDF-Ad	bronchial

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