Variant report

Variant	rs3825402
Chromosome Location	chr12:51127738-51127739
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:51127689..51130073-chr12:51139077..51141310,3	K562	blood:
2	chr12:51014624..51017594-chr12:51125519..51128159,2	MCF-7	breast:
3	chr12:50898202..50899146-chr12:51127703..51129153,4	K562	blood:
4	chr12:51126340..51128036-chr12:51129957..51132479,2	K562	blood:

Variant related genes	Relation type
ENSG00000066084	Chromatin interaction

Extended variants
information (count: 131 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:131)

rs_ID	r²[population]
rs1003033	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs10431486	0.81[EUR][1000 genomes]
rs10431535	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10444547	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10459233	0.90[CEU][hapmap]
rs10459234	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10459235	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10506294	0.90[CEU][hapmap];0.86[CHB][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10506295	0.90[CEU][hapmap];0.86[CHB][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10747585	0.81[EUR][1000 genomes]
rs10747587	0.90[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10783369	0.81[EUR][1000 genomes]
rs10783370	0.81[EUR][1000 genomes]
rs10783371	0.81[EUR][1000 genomes]
rs10783372	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs10783373	0.90[CEU][hapmap];0.97[GIH][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes]
rs10783374	0.81[EUR][1000 genomes]
rs10783378	0.81[EUR][1000 genomes]
rs10783381	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10783382	0.90[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10783383	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10783384	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10783389	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10876047	0.81[EUR][1000 genomes]
rs10876051	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs10876052	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs10876053	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs10876056	0.90[CEU][hapmap];0.80[EUR][1000 genomes]
rs10876058	0.81[EUR][1000 genomes]
rs10876061	0.81[EUR][1000 genomes]
rs10876063	0.81[EUR][1000 genomes]
rs10876065	0.90[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs10876070	0.90[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10876071	0.90[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10876072	0.90[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10876073	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10876075	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10876076	0.90[CEU][hapmap];0.86[CHB][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10876080	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10876081	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10876089	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10876090	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10876094	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10876095	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10876096	1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10876097	1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11169479	0.81[EUR][1000 genomes]
rs11169480	0.81[EUR][1000 genomes]
rs11169481	0.80[EUR][1000 genomes]
rs11169487	0.81[EUR][1000 genomes]
rs11169493	0.90[CEU][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs11169505	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11169507	0.90[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.85[TSI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11169515	0.90[CEU][hapmap];0.86[CHB][hapmap];0.88[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11169528	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11169532	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11169537	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11169538	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169539	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169544	0.95[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11169552	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11169554	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11169560	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11169561	1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11613488	0.90[CEU][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs11615933	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12230242	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12231309	0.90[CEU][hapmap];0.85[CHB][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12231317	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12424860	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12580051	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12580479	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12582712	0.81[EUR][1000 genomes]
rs12809086	0.90[CEU][hapmap];0.86[CHB][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1344958	1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17124930	0.89[CEU][hapmap];0.85[CHB][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2090851	0.81[EUR][1000 genomes]
rs35845404	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3742063	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3742064	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3809319	1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3893353	0.81[EUR][1000 genomes]
rs3935138	0.83[CEU][hapmap]
rs4026593	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4131769	0.90[CEU][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs4238106	0.90[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4238108	0.90[CEU][hapmap];0.86[CHB][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4307773	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4388959	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs4516034	0.81[EUR][1000 genomes]
rs4768850	0.81[EUR][1000 genomes]
rs4768852	0.80[EUR][1000 genomes]
rs4768853	0.90[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs4768858	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4768866	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4768884	0.81[EUR][1000 genomes]
rs4768888	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs4768889	0.81[EUR][1000 genomes]
rs4768892	0.81[EUR][1000 genomes]
rs4768893	0.81[EUR][1000 genomes]
rs4768895	0.81[EUR][1000 genomes]
rs4768899	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4768903	0.81[CHB][hapmap]
rs4768904	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4768906	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4768907	0.84[ASW][hapmap];0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.85[TSI][hapmap];0.83[YRI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4768911	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4768912	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4768913	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4768914	1.00[ASW][hapmap];0.95[CEU][hapmap];0.90[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4768917	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4768921	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4768922	1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4768923	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4768924	0.95[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap]
rs4768925	0.95[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap]
rs55877451	0.80[EUR][1000 genomes]
rs61926275	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6580761	0.83[EUR][1000 genomes]
rs7134976	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7138604	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs7305375	0.90[CEU][hapmap]
rs7307419	0.90[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73094900	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73096846	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7956591	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs864899	0.86[CHB][hapmap]
rs876078	0.90[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs876079	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs952318	0.90[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.85[TSI][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9788159	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3825402	DIP2B	cis	Thyroid	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51063200-51138600	Strong transcription	Primary monocytes fromperipheralblood	blood
2	chr12:51063600-51138800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr12:51063600-51145400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr12:51067400-51143600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr12:51067600-51142200	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr12:51068200-51141200	Strong transcription	Placenta	Placenta
7	chr12:51068200-51144000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:51074600-51139600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr12:51080200-51145400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr12:51086200-51140800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr12:51086200-51142600	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr12:51090400-51145400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr12:51090600-51138400	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr12:51093600-51128600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr12:51096000-51142000	Strong transcription	Fetal Muscle Leg	muscle
16	chr12:51096200-51144600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr12:51098800-51128200	Strong transcription	Brain Germinal Matrix	brain
18	chr12:51101000-51144800	Strong transcription	Fetal Stomach	stomach
19	chr12:51105400-51133600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr12:51108200-51142200	Strong transcription	Sigmoid Colon	Sigmoid Colon
21	chr12:51110600-51141200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr12:51110600-51144800	Strong transcription	Rectal Mucosa Donor 31	rectum
23	chr12:51110800-51142200	Strong transcription	Lung	lung
24	chr12:51111400-51141600	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr12:51111400-51141800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr12:51111400-51144600	Strong transcription	Fetal Muscle Trunk	muscle
27	chr12:51111600-51142200	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr12:51111800-51136600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr12:51112000-51141800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr12:51112000-51142000	Strong transcription	Dnd41	blood
31	chr12:51112000-51144800	Strong transcription	Primary T cells from cord blood	blood
32	chr12:51112200-51127800	Strong transcription	Fetal Brain Female	brain
33	chr12:51112200-51144800	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr12:51114200-51144800	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr12:51114400-51128000	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chr12:51114600-51127800	Strong transcription	Thymus	Thymus
37	chr12:51114800-51129000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr12:51114800-51141800	Strong transcription	HepG2	liver
39	chr12:51114800-51142400	Strong transcription	Duodenum Mucosa	Duodenum
40	chr12:51116200-51140200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr12:51116200-51144000	Strong transcription	Fetal Intestine Large	intestine
42	chr12:51116800-51144000	Strong transcription	Primary B cells from peripheral blood	blood
43	chr12:51116800-51144800	Strong transcription	Primary B cells from cord blood	blood
44	chr12:51117200-51131200	Strong transcription	Primary hematopoietic stem cells	blood
45	chr12:51118200-51143600	Strong transcription	Adipose Nuclei	Adipose
46	chr12:51118800-51133400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr12:51119000-51139000	Strong transcription	Brain Substantia Nigra	brain
48	chr12:51119200-51130800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr12:51119200-51144600	Strong transcription	Liver	Liver
50	chr12:51120000-51128800	Strong transcription	Brain Anterior Caudate	brain

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